RNA id: TU310476


Basic Information

Item Value
RNA id TU310476
length 405
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G228836
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19365124 ~ 19365528 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTAGATGTTGGTCATGTCCTTCACCATGAGCCTCCACAGGTACTTGTAGAGGTAGGAGAGACAGGTGAAAGCCCACTCCAGGACCTCTGTGTCCTTGGTGTCCAGCAGCGAGGTGATCAGAACGAAGAAGTCGGGGAAGTGGGGGTAGAAGTCAGTCTGCAGGTCTCTGGCCAGCTGCACCACCAGActggagaaaggaggagagacgCCGCTAGTACATCACCTTCCAATTCAACAACAATTCCGTCCCTCTAGTAAACACAAGACTACTTACTCCAGCAGTGGCTGGTAGGCCAGACTGTTCTTGACAGCCAGGTGCGTTTTCAGACTCTCCACTATCGACTTCTGATGGAAAACCAGCATGTTGAATGACTGGCTCTGGTTTGAAACCTCTTTCAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310475 lncRNA downstream 708 19364156 ~ 19364416 (-) True G228835
TU310474 lncRNA downstream 1743 19363172 ~ 19363381 (-) True G228834
TU310457 lncRNA downstream 29096 19332641 ~ 19336028 (-) True G228826
TU310454 lncRNA downstream 36781 19326621 ~ 19328343 (-) True G228824
TU310342 lncRNA downstream 94788 19162017 ~ 19270336 (-) False sox5
TU310478 lncRNA upstream 8676 19374204 ~ 19375361 (-) True G228838
TU310479 lncRNA upstream 9931 19375459 ~ 19375795 (-) True G228839
TU310495 lncRNA upstream 48802 19414330 ~ 19414602 (-) True G228855
TU310491 lncRNA upstream 115293 19480821 ~ 19481084 (-) True G228851
TU310512 lncRNA upstream 115696 19481224 ~ 19481477 (-) True G228869
XM_039792053.1 mRNA downstream 3014 19355872 ~ 19362110 (-) True slc5a8
XM_039791263.1 mRNA downstream 11633 19346382 ~ 19353491 (-) False dnai7
XM_039791046.1 mRNA upstream 31328 19396856 ~ 19407358 (-) True arl1
XM_039791045.1 mRNA upstream 52713 19418241 ~ 19428429 (-) False LOC120553005
XM_039791044.1 mRNA upstream 52713 19418241 ~ 19428429 (-) True LOC120553005
XM_039791749.1 mRNA upstream 129891 19495419 ~ 19504306 (-) False rpap3
XM_039791750.1 mRNA upstream 129891 19495419 ~ 19503924 (-) True rpap3
XR_005638136.1 other downstream 943717 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 1264129 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 1437419 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 2062926 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 2541692 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 72989 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 77704 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 81493 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 82536 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 86460 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile