RNA id: TU310530


Basic Information

Item Value
RNA id TU310530
length 332
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G228882
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19514103 ~ 19514434 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACAAATTCACCTCTGAACATACATTGATACTGGATTAATAATTACCCAAGCCCATTAATTCTAGGTTGTGCTCTGCTCTTTTCTCTCCAGGTTCACTCTGTCCAGGTTGGTCTTGTATTCTGTTGTGTCCTGTTACTTCATGTTTGCTGTTATCTCGTTTCATTTCCATTGTTTGTCTCCCCCTCTGTTTGGTTCCATTCCGTCTCTTCTGTTTGCATTTATTTGTTTCAGTTTTCTTGCGTTTGTTACAATTctcttgtctttttctgttgTGTCCTGATTTTCTTTACATATTATTCGCAGCTTTCAATTCACAGAGTTTGACTGAAT

Function

GO:

id name namespace
GO:0005507 copper ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310528 lncRNA downstream 6543 19506683 ~ 19507560 (-) True G228881
TU310527 lncRNA downstream 14493 19499238 ~ 19499610 (-) True G228880
TU310514 lncRNA downstream 30950 19482867 ~ 19483153 (-) True G228871
TU310513 lncRNA downstream 31486 19482172 ~ 19482617 (-) True G228870
TU310512 lncRNA downstream 32626 19481224 ~ 19481477 (-) True G228869
TU310533 lncRNA upstream 36183 19550617 ~ 19569359 (-) True G228885
XR_005638134.1 lncRNA upstream 202788 19717222 ~ 19718412 (-) True LOC120553214
TU310618 lncRNA upstream 338530 19852964 ~ 19905943 (-) True G228946
TU310627 lncRNA upstream 343669 19858103 ~ 19858863 (-) True G228949
TU310623 lncRNA upstream 362663 19877097 ~ 19882079 (-) True G228947
XM_039791749.1 mRNA downstream 9797 19495419 ~ 19504306 (-) False rpap3
XM_039791750.1 mRNA downstream 10179 19495419 ~ 19503924 (-) True rpap3
XM_039791748.1 mRNA downstream 10184 19495419 ~ 19503919 (-) False rpap3
XM_039791045.1 mRNA downstream 85674 19418241 ~ 19428429 (-) False LOC120553005
XM_039791044.1 mRNA downstream 85674 19418241 ~ 19428429 (-) True LOC120553005
XM_039792228.1 mRNA upstream 32192 19546626 ~ 19569057 (-) True lrig3
XM_039791390.1 mRNA upstream 218632 19733066 ~ 19806755 (-) False LOC120553212
XM_039791388.1 mRNA upstream 218632 19733066 ~ 19806755 (-) True LOC120553212
XM_039791379.1 mRNA upstream 292380 19806814 ~ 19839350 (-) True etv6
XM_039791380.1 mRNA upstream 293605 19808039 ~ 19839349 (-) False etv6
unassigned_transcript_1502 other downstream 61075 19452946 ~ 19453028 (-) True trnal-cag_24
unassigned_transcript_1501 other downstream 61553 19452469 ~ 19452550 (-) True trnal-cag_23
unassigned_transcript_1500 other downstream 62030 19451988 ~ 19452073 (-) True trnal-cag_22
unassigned_transcript_1499 other downstream 65957 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1498 other downstream 67000 19447021 ~ 19447103 (-) True trnal-cag_20
TU310604 other upstream 218668 19733102 ~ 19807098 (-) True G228934
TU310602 other upstream 296811 19811245 ~ 19839302 (-) False etv6
TU310603 other upstream 296811 19811245 ~ 19839302 (-) False etv6
TU310704 other upstream 552602 20067036 ~ 20122339 (-) False rerg
TU310933 other upstream 1443223 20957657 ~ 20958220 (-) True G229199

Expression Profile