RNA id: TU310544


Basic Information

Item Value
RNA id TU310544
length 1676
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC120553210
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19631937 ~ 19839382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aattgattaaaaaatcgTCACTGTGATGCCTTTGCGAAACGGAATGGACTTGTGTATTGAAATGTAAAGAAAGTTAGTTCTACTCAGGCCTTACACAACAAACAATAGAAAGTTAACcgcacattttaaattaaacaatctGGAAAGGTAATGTTAGAATTGTTTTCTAGTGTTGCTAATATCAGCTTCTGTGAGGCTTgctagctagcaagctagcAGGGATGGAGTTTTGTCAACCAACAAACTAAATTGCCGTCACAGCAAAAGCAGTGGGACATTATACCGATATGGACACTTAACCTCCACAAAAGAGAGGAGAATGGACGTCAAATAAGCCTTAGGTCTGTGGCTGCAGGCGGAGGAGGAAGTGTCCCGATCGGCCCGCCTCTCCGTCCTCGCCGCTGTGTCAACGTATTTCATCATCCGAGGATTCACTCCATTTGCTTCAGGAGAATATCATCCTAAGGCAATCTTAAGAGAGAtttcatgtctgtctgtgtgggacTGGTACGAGCCAAACGTCCACGCGCTCCAGATTCAACGACCATTGTTCAGGCTGCTTCTGAAAGGCATCGGCGGCTGTAGTAAATACACCTCTAATATCCCCAAGAAATTCATGAAGAGGTGAAAAGAAGACGAGTACCGGAGTGGGGGGACCGGTAGCGGAAGTCCTCCTTGGTGAGCAGCAGCAGGGCTTTGCCGTTCATTTGGAAAGATCCGCTGGTGATCGGCCGCAGGGCGAACTCCTTCTCGGCCCATCGCAGCCACTGGGCCACGTCCTCCCTGCTCCAAAAGACTGGCTGCAGACCTGGAGGTGGAAGGGTTGGGGGAGAAGGGGGAGGAGACGGGGTTGAGACCAGAGTTTTTGTAAAGAAGCAACAAAGTGGAGGTGACGGGGAAGGGAAGGAAGAGAAATCGGATGAGTTCAGTGGAGAAGAGGCAGAAGGACAGGagggggaggaaggaaggaaaaaaaggaaggcAGGAAGGAGGGGGGTGATAAGGAGGAGGGAAAGGGGGCggggagaggaaggaaggaggcaGAGGCAGTAAAAAGGATATTGAGGAAGTGGAGATAAAAGCCAAAAGGAGGGAGTGATTACGGGAACGGCAGCagagataaagaaaagaaaaaaaaagatggaggaGACAgtcagaaagggagaggaggttAGAATAAAAGATTAGAGGATGATAGGTTAAGGGGAAGAATACAGAATGACTCACAAGGATTAAAAAGGAGGTGGCAGGGATATGAAAGACTGTTATTTTATGTTATCGGTTATGATCTGTGCTGCTCTTCTCTGAACTCcagacagacagtttattagTTTGTGTATAAACAGACAAGGACACATGGAGGGAAAGAGAGCAGAGGAAACCGCAATGacagtatcttttttttttttccttccctcGCACTCTGAAATGTTTCTTTCTCTGCCGTGGGAACAGCAGTGTAAAACATCTGCGCTGGTGACCAACAACAAGCATGCAGAGGCATCAGGGAGAGActgtgaaaatgaagaaaatcgGAACAGAATCTCAATTTCATCTGAGTGTCGTGAATTTTAGTTGTAAAAACATTTCTCAGAATAAGGACAAGAGGTTGCTTTGGACATTACTGGCAGCGAGTAAGAAAACCATAACCAGGAAATGGTTGAAACCGGACCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638191.1 lncRNA upstream 134990 19524075 ~ 19559043 (+) True LOC120553618
TU310405 lncRNA upstream 273204 19420372 ~ 19420829 (+) True G228787
TU310389 lncRNA upstream 338515 19353004 ~ 19355518 (+) False LOC120553164
XR_005638135.1 lncRNA downstream 14818 19834007 ~ 19841662 (+) True LOC120553215
TU310573 lncRNA downstream 33739 19852928 ~ 19905935 (+) False LOC120553104
TU310570 lncRNA downstream 35382 19854571 ~ 19882134 (+) False LOC120553104
TU310581 lncRNA downstream 50204 19869393 ~ 19871723 (+) True G228912
TU310591 lncRNA downstream 96926 19916115 ~ 19916317 (+) True G228922
XM_039791381.1 mRNA upstream 24923 19631938 ~ 19669110 (+) False LOC120553210
XM_039791383.1 mRNA upstream 24923 19631944 ~ 19669110 (+) False LOC120553210
XM_039791385.1 mRNA upstream 24923 19631947 ~ 19669110 (+) False LOC120553210
XM_039791387.1 mRNA upstream 43217 19631947 ~ 19650816 (+) False LOC120553210
XM_039791382.1 mRNA upstream 45812 19631937 ~ 19648221 (+) False LOC120553210
XM_039791188.1 mRNA downstream 63189 19882378 ~ 19905952 (+) False LOC120553104
XM_039791187.1 mRNA downstream 63193 19882382 ~ 19905952 (+) True LOC120553104
XM_039791788.1 mRNA downstream 104582 19923771 ~ 20047996 (+) True LOC120553417
XM_039791789.1 mRNA downstream 104582 19923771 ~ 20047262 (+) False LOC120553417
XM_039791782.1 mRNA downstream 305452 20124641 ~ 20162039 (+) True LOC120553415
unassigned_transcript_1503 other upstream 234879 19459083 ~ 19459154 (+) True trnaq-uug_5
TU310402 other upstream 280329 19410490 ~ 19413704 (+) True G228784
TU310117 other upstream 1162865 18530165 ~ 18531168 (+) False srr
unassigned_transcript_1495 other upstream 2103870 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 2771210 16919663 ~ 16922823 (+) True G228335
TU310593 other downstream 163059 19982248 ~ 19985648 (+) True G228924
TU310663 other downstream 327889 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other downstream 351530 20170719 ~ 20173399 (+) False LOC120553749
TU310736 other downstream 563237 20382426 ~ 20391406 (+) False ucmaa
unassigned_transcript_1504 other downstream 1760124 21579313 ~ 21579423 (+) True trnal-caa_25

Expression Profile