RNA id: XM_039791386.1


Basic Information

Item Value
RNA id XM_039791386.1
length 953
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC120553210
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19631937 ~ 19839382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACCATACCCCATtaagacaaagacaaaacaggatttttgacttttttttcaaacatataAGGAAAAACCTGTATATTACATTGACATAAGTATCCAGACTTGTTGCTATGAGACTTGAAATTGAGCTCAGGTGCCTCCCATTCTGTCTTGATCATCTTGCTTGATTGGAGTCCACCTGTGGCAAATCCAATTGATTGGAAAGGATTTAGAAAGCTACACACCTGTCAGGGAGACTGATCAGAATTGAAGGAAGGAGCCAAAGACAGGGAGGTGCTTGAAGAAAAACTGGGTCGACGGTTCACCTTTCTACACGACAATGACCCGACGCATTCAGCCAAGATGAAGCTGGACTGGCTTCAGGACAAGTCTGCGACTGTCCATGATTGGCCATCCAAAACCTAGACTTAAaatccacataaaaaaaaaacaacctgtggAGAGACATGAAGATGGCAGTTCAGACGCTTCCCATCCAATCTGATGGTGTTTGAGAGGATCTGCCAGAAAGAACTGAATAAACTTCCCAAAAATCCAGGTTCGTGCCTGGCGGCAGTGGAGAAAGCCGTAGCGGAGACGGACGTGGCTGCCGTCCTGCCGCTGGGCCGTCAGCACAGCCTGCTGAACATCATCAATGTGCTGATCCAGAAACTGGGCCACCTCATCCACATCTACCTGCCCAAGGTGCTGCAGATCCTGCTGTGTGTCACCGCCTCTGTGTCCACCCTCCTGGACAACAGATTTCTAATGCAGCGATACATCATATGGACTAATGCGCCCCACTTTGACAGCGGAAGCCTTTAGAAGTCAGAAAAGGCCCGAGGCTATAGATGGCATTTCAGCATATCTGTCTGCTCCAGCGCCAGGTTGTGCAGTGAAGAACTGGCTGTTCGTTCTCCGGCGAGCGTTCTGCCACTTACTGACTAGATCTAGCTGTAGCTCAGTGTCAGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638191.1 lncRNA upstream 72902 19524075 ~ 19559043 (+) True LOC120553618
TU310405 lncRNA upstream 211116 19420372 ~ 19420829 (+) True G228787
TU310391 lncRNA upstream 276584 19353004 ~ 19355361 (+) False LOC120553164
TU310392 lncRNA upstream 276584 19353004 ~ 19355361 (+) False LOC120553164
TU310390 lncRNA upstream 277473 19353004 ~ 19354472 (+) False LOC120553164
TU310544 lncRNA downstream 54552 19694033 ~ 19819189 (+) False LOC120553210
TU310546 lncRNA downstream 54552 19694033 ~ 19839382 (+) False LOC120553210
TU310548 lncRNA downstream 54552 19694033 ~ 19732007 (+) False LOC120553210
XR_005638133.1 lncRNA downstream 76781 19716262 ~ 19717346 (+) True LOC120553213
TU310543 lncRNA downstream 167174 19806655 ~ 19808816 (+) True LOC120553210
XM_039792015.1 mRNA upstream 4232 19594413 ~ 19627713 (+) True LOC120553510
XM_039792017.1 mRNA upstream 4232 19595052 ~ 19627713 (+) False LOC120553510
XM_039792016.1 mRNA upstream 4232 19595164 ~ 19627713 (+) False LOC120553510
XM_039791751.1 mRNA upstream 124354 19504380 ~ 19507591 (+) True atp23
XM_039791747.1 mRNA upstream 136622 19487602 ~ 19495323 (+) True LOC120553398
XM_039791188.1 mRNA downstream 242897 19882378 ~ 19905952 (+) False LOC120553104
XM_039791187.1 mRNA downstream 242901 19882382 ~ 19905952 (+) True LOC120553104
XM_039791788.1 mRNA downstream 284290 19923771 ~ 20047996 (+) True LOC120553417
XM_039791789.1 mRNA downstream 284290 19923771 ~ 20047262 (+) False LOC120553417
XM_039791782.1 mRNA downstream 485160 20124641 ~ 20162039 (+) True LOC120553415
unassigned_transcript_1503 other upstream 172791 19459083 ~ 19459154 (+) True trnaq-uug_5
TU310402 other upstream 218241 19410490 ~ 19413704 (+) True G228784
TU310117 other upstream 1100777 18530165 ~ 18531168 (+) False srr
unassigned_transcript_1495 other upstream 2041782 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 2709122 16919663 ~ 16922823 (+) True G228335
TU310593 other downstream 342767 19982248 ~ 19985648 (+) True G228924
TU310663 other downstream 507597 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other downstream 531238 20170719 ~ 20173399 (+) False LOC120553749
TU310736 other downstream 742945 20382426 ~ 20391406 (+) False ucmaa
unassigned_transcript_1504 other downstream 1939832 21579313 ~ 21579423 (+) True trnal-caa_25

Expression Profile