RNA id: XM_039791378.1


Basic Information

Item Value
RNA id XM_039791378.1
length 2193
RNA type mRNA
GC content 0.55
exon number 8
gene id etv6
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19806814 ~ 19839350 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaaaggggagagagagacttgCTCTTCCAGGAAGGGATTATTAACCAGCACGCTGCCGACATAGGAAGGGAAAACACACGCAGACAAAAGAAGTTTGCACACCGACAGCCGCGCTATGGAGCCGACCAGCAGataaaaggaagaagaaaaaagaaaaaaaagaaaaggaaaaagcagGCTATATGAAAAAAGCAACTTCTCCCACAACAACAAGCCGAGCAGTCGGACTGCCGCTTCTGCTGTGTGGGTTTCTATAGGAAAGAGAAGGAGATAAAGAAGAGGACACAACGGAAAAgtggaaggagaaggagagaagttgACGGAAGATAATGTCTGAATCCTCCTCCGCTGCGAACAAGCAGGAGAGGAGCTCTTTCAGTCCTTCCGCGAACCCGCTGCCAAACTCCACTTCCTCCCCCGTCCATGCTCCCGCCGCGAGGCCAGCCAGCCGAATGGAGGACGAGCCTGCCAGGCTGCCTGCGCACCTGCGTCTGCAGCCAGTCTTTTGGAGCAGGGAGGACGTGGCCCAGTGGCTGCGATGGGCCGAGAAGGAGTTCGCCCTGCGGCCGATCACCAGCGGATCTTTCCAAATGAACGGCAAAGCCCTGCTGCTGCTCACCAAGGAGGACTTCCGCTACCGGTCCCCCCACTCCGGGGACGTCCTGTACGAGCTGCTGCAGCACATCCTGAAGCAGAGGAAGCCCCACGTGTTTTACCCGTCTGCCTACTTCCCTGGGAACTCCTTCCACTCGCTGCCTGAAAGCGCTGTGCAGCACCTGAAGCTTGaagAAACGGTACGGCGGGCACCGCGTGGTACAGAGCCTGCCCCCCAGCATCCACCAACCATCGAGCTGCGGCACCGCTCACGCTCCCCCCACCAGAACCAGATCAGACGATCCCCCCCGGGGCCGAACCACCCCCGCGCAGCCAACGAAGACCACCTGCAGACCTTCTCCCAGCTGCCCGACAGCAACCACCACCTGCCCGAAGAAATGTACCCTCTGTCCGTGTCCCCCGCCGCACCCAACGGCCGCTGCGCCACGCCCCGAGAAGCTCCGTGCCCGGGCAGCCCCGGGGGCCAGGAGGCGGGCCCTCCTCGCGTCATCCAGCTCATGCCCAGCACCATCATGAACCCCCTGCTCCTCAGCCCGAGCCGGAGCGGCGAGGGTGCCGCCATGGACTTCAGGCACAGCCGCGGTGGGCCCCCGTCTCAAGCCACGCTCGAGAACGGCCGTGAGAGGAAAGCCCACGGCCACCACCATCAGCTACCACTGTCCCAGCAACAGCAGcatctgctgcagcagcagcagcagcaagaggAGGCACTCTACAGGAACCACGTCATCATGCCCGTGTCTCCTCCAGAAGAGCAACAAATGCCCATCGGACGGATAGCAGACTGCAGGCTGCTGTGGGACTACGTCTACCAGCTCCTGTCAGACAGCAGGTACGAGAACTACATCCGCTGGGAGGATACCGAGACCAAAATCTTCCGCATCATGGACCCCAACGGCCTGGCCAGGCTCTGGGGCAATCACAAGAACAGGACCAACATGACGTACGAGAAGATGTCGCGAGCACTGAGACACTACTATAAACTGAACATTATCAGGAAGGAGCCGGGCCAAAGACTTCTATTCAGGTTCATGAAAACTCCCGATGAGATAATGAATGGACAGACGGACCGGCTGGAGCACCTGGAGTCCGACACAGACGAACAAATCTACATCAAAGAGGAATGCTGAGGAACTCTCGGTAAACGAGGCCATGAACTACTTACTACTTACTACTACAGCCGCCGATGCCTTTCAGAAGCAGCCTGAACAATGGTCGTTGAATCTGGAGCGCGTGGACGTTTGGCTCGTACCAgtcccacacagacagacatgaaaTCTCTCTTAAGATTGCCTTAGGATGATATTCTCCTAAagtcaaaaagaagaaaaaaaaaaaaaaaaacagcgtcagtttttgtgattttttcctGATGGACAGATGCTGAAAAGACTTTGAGTGTTCTTTTATTTCTGAATGAACTGCAAAAGCCAATCACTTTGTGCTTACGTCACTTTGATGATTTTATTGTCTCCTCACAAGCATTATACTAGTGCtgtttgtaaaaagaaaattgtgtgcgcgcgcgtgtgacAATATGTTTTCACCATGGAATAAACGTTTTCGATCAAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638134.1 lncRNA downstream 89627 19717222 ~ 19718412 (-) True LOC120553214
TU310533 lncRNA downstream 238680 19550617 ~ 19569359 (-) True G228885
TU310530 lncRNA downstream 293605 19514103 ~ 19514434 (-) True G228882
TU310528 lncRNA downstream 300479 19506683 ~ 19507560 (-) True G228881
TU310527 lncRNA downstream 308429 19499238 ~ 19499610 (-) True G228880
TU310618 lncRNA upstream 13615 19852964 ~ 19905943 (-) True G228946
TU310627 lncRNA upstream 18754 19858103 ~ 19858863 (-) True G228949
TU310623 lncRNA upstream 37748 19877097 ~ 19882079 (-) True G228947
TU310720 lncRNA upstream 461753 20301102 ~ 20301438 (-) False cdk17
TU310764 lncRNA upstream 516287 20355636 ~ 20357563 (-) True G229062
XM_039791390.1 mRNA downstream 1284 19733066 ~ 19806755 (-) False LOC120553212
XM_039791388.1 mRNA downstream 1284 19733066 ~ 19806755 (-) True LOC120553212
XM_039792228.1 mRNA downstream 238982 19546626 ~ 19569057 (-) True lrig3
XM_039791750.1 mRNA downstream 304115 19495419 ~ 19503924 (-) True rpap3
XM_039791791.1 mRNA upstream 144130 19983479 ~ 20000522 (-) True LOC120553419
XM_039792445.1 mRNA upstream 227546 20066895 ~ 20122393 (-) True rerg
XM_039791786.1 mRNA upstream 420676 20260025 ~ 20272137 (-) True cep83
XM_039791783.1 mRNA upstream 420676 20260025 ~ 20272132 (-) False cep83
XM_039791784.1 mRNA upstream 420676 20260025 ~ 20270905 (-) False cep83
TU310604 other downstream 941 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 355011 19452946 ~ 19453028 (-) True trnal-cag_24
unassigned_transcript_1501 other downstream 355489 19452469 ~ 19452550 (-) True trnal-cag_23
unassigned_transcript_1500 other downstream 355966 19451988 ~ 19452073 (-) True trnal-cag_22
unassigned_transcript_1499 other downstream 359893 19448064 ~ 19448146 (-) True trnal-cag_21
TU310704 other upstream 227687 20067036 ~ 20122339 (-) False rerg
TU310933 other upstream 1118308 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 1224342 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 1931739 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 1931787 21771136 ~ 21811097 (-) False LOC120553090

Expression Profile