RNA id: TU310604


Basic Information

Item Value
RNA id TU310604
length 1717
RNA type TUCP
GC content 0.46
exon number 6
gene id G228934
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19733102 ~ 19807098 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAGGCTGCAGACTCAAGTGATGGATCAGGATCGATCCCACTTTGAGAAATTCATAGAATAATTTTGAGTGTGCGCTGTAATCCACTGGGGGGGGACGCAGTTAAAGCTTATCATTGTGAACAGGCTGCTGCTTGTTTCTGGACTCTAACGGAATAAACAGACAGGGGGAGGGTTTGGATGCAGGAGAATCTCGGCTGTGCGGCGGATAAGATGCTCACGCTGCCACGTTTAGAAGACCAATAATCGTGTCTGATTCTGACAAAGCAGTTTGATTTCATtcgggtgggaaaaaaaaaaagaggcaccactcccgttttttttgttttttttttcgccaATCCAGGACGCAAATGTCTTCACATCACAGACACTCCAGTGGATTGTAGCAGCAGCCCCGCCGATGGTTTTGAGAGGGCGTTAAAGGTGCGGGAAGGGAGTGGGACAATTACAGGATGAGTGAGCGATACACCCAGATCGGAAGTAAAGGGGCTCTACTAGTAATGGTGCTTGTGATCAGTGTCTGGGAGATGACCGTACCAACAGAAGGGGCTACAGCAGCGCATCATGTCCGAACAGGCACCTGCGAGGTGGTGGCGTTGCATCGCTGCTGCAACAAGAACAAAATCGAGGAGCGGTCGCAAACTGTGAAGTGCTCCTGCTTTCCCGGGCAAGTGGCCGGCACCACCAGGGCCGCCCCGTCATGTGTAGATGCCTCCATAGTGGAGCAGAAGTGGTGGTGTCAGATGCATCCGTGCCTTGACGGGGAGGAATGCAAAGTTCTTCCTGATCTGAAGGGCTGGAGCTGTGCGACAGGGAACAAGATCAAAACTACCAAGATTTCCGCGGACAAAGAGCAGCTTTGGTAACGGCAGAGGCTTCACAGCGGAGTCCAGGTGAACCAACGGTTCTGGTTTTTATCGGATCATCAAAAGAGAAGTAATGCAAAGGACCTTTTCTGTAAATAGAGACTCTCTTCTGGACTGCAATTAATCTTTGGAAAACTCTGAATGCTTCTTCTTGAACTGGATGAACATCAAGCCCTGATCATTCAGCACTTCTTTTTGAAGGACTCCATATGATTAGCCTTACCGGACGACAGGATTTATTCTGCGACATTGTCCTGCTTGTAGTGGAAACCAACGGTGAACCTTGCCTATGTGTTAATTTCTAGACTAATATGTCCTTTACGGAGGGATTTGCATCACAGGTTGACCAGGGTGAACAGCAGGTCAGTTTGCTGTAAGCATCGCAAATATTCAATACAAAATGTGATTTTCTTTAATCAGTCAATTGTGGCTTTCTTCTCAAAAACAATGTGTAGTTCCAAAGGTTCAGATATAGATGAAAATATGTGGCTGAGCGGCAGATATTCAGGGCGATTTTCAAAGAAATGCACAACCAAATCTCGTAAACCTACTACACATTGTGCAGACTGCTGAACTGAACCAGCGCTGCAAAAAGTTCAAACTGGTCAAACTATCAGTCGTTATCGGACAGAAAGTTACATCACTCTGCCATTTCCAGTCGCTTCTGCCAGATTTTGGTTTTGTGTCACAAGCTCTGGAGCTCAGATTCTAGACAACAGCAGtgtacattaaaacacacagcatCTGGTCACTGACAACAATGTTCCCAAAACGGTTTTTCGACTCAAAGTATGATTTGCTGTTCACCTTTCAGTAGGTATTGCTGACACTTCCTTTGTCTGTGTAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638134.1 lncRNA downstream 14690 19717222 ~ 19718412 (-) True LOC120553214
TU310533 lncRNA downstream 163743 19550617 ~ 19569359 (-) True G228885
TU310530 lncRNA downstream 218668 19514103 ~ 19514434 (-) True G228882
TU310528 lncRNA downstream 225542 19506683 ~ 19507560 (-) True G228881
TU310527 lncRNA downstream 233492 19499238 ~ 19499610 (-) True G228880
TU310618 lncRNA upstream 45866 19852964 ~ 19905943 (-) True G228946
TU310627 lncRNA upstream 51005 19858103 ~ 19858863 (-) True G228949
TU310623 lncRNA upstream 69999 19877097 ~ 19882079 (-) True G228947
TU310720 lncRNA upstream 494004 20301102 ~ 20301438 (-) False cdk17
TU310764 lncRNA upstream 548538 20355636 ~ 20357563 (-) True G229062
XM_039792228.1 mRNA downstream 164045 19546626 ~ 19569057 (-) True lrig3
XM_039791749.1 mRNA downstream 228796 19495419 ~ 19504306 (-) False rpap3
XM_039791750.1 mRNA downstream 229178 19495419 ~ 19503924 (-) True rpap3
XM_039791748.1 mRNA downstream 229183 19495419 ~ 19503919 (-) False rpap3
XM_039791045.1 mRNA downstream 304673 19418241 ~ 19428429 (-) False LOC120553005
XM_039791380.1 mRNA upstream 941 19808039 ~ 19839349 (-) False etv6
XM_039791378.1 mRNA upstream 941 19808039 ~ 19839349 (-) False etv6
XM_039791791.1 mRNA upstream 176381 19983479 ~ 20000522 (-) True LOC120553419
XM_039792445.1 mRNA upstream 259797 20066895 ~ 20122393 (-) True rerg
XM_039791786.1 mRNA upstream 452927 20260025 ~ 20272137 (-) True cep83
unassigned_transcript_1502 other downstream 280074 19452946 ~ 19453028 (-) True trnal-cag_24
unassigned_transcript_1501 other downstream 280552 19452469 ~ 19452550 (-) True trnal-cag_23
unassigned_transcript_1500 other downstream 281029 19451988 ~ 19452073 (-) True trnal-cag_22
unassigned_transcript_1499 other downstream 284956 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1498 other downstream 285999 19447021 ~ 19447103 (-) True trnal-cag_20
TU310602 other upstream 4147 19811245 ~ 19839302 (-) False etv6
TU310603 other upstream 4147 19811245 ~ 19839302 (-) False etv6
TU310704 other upstream 259938 20067036 ~ 20122339 (-) False rerg
TU310933 other upstream 1150559 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 1256593 21063691 ~ 21145533 (-) False ptprz1b

Expression Profile