RNA id: TU310663


Basic Information

Item Value
RNA id TU310663
length 393
RNA type TUCP
GC content 0.47
exon number 4
gene id LOC120553749
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20147078 ~ 20173407 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGTCTGGTGCGGCACTATAAAAAGTTGCACATTTGAAGATGACTGCCAAGATTCAGACTGGTTATCCATTCCTGACGATTCTCAACAGAAAATGGTTTCCTACAAAGTTGTAAAGGACGACACAGGCCAGATTACACTTAACATCCAGACACATCTGAGTGTGGGCCAGAAGGCGCTGTCTAACTTCGCCTGTAAATTCTCTGCAAGTTCCAGTAAGCTTTGCAGAGACGGCCTTCCTCAACAATTCCCACAATGCACCTGCATCCTTTCTAATAGCACACTTCCTGCTGGAGGCCTGCATGTCACAGTTAAGATTAGAGTTGGGACGACACAATTGTCTAAAGCACTGAAGCTGTCCAACTGCTCAGACATCGAGGGACCGCCAACTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638180.1 lncRNA upstream 225224 19921100 ~ 19921854 (+) True LOC120553527
TU310591 lncRNA upstream 230761 19916115 ~ 19916317 (+) True G228922
TU310573 lncRNA upstream 241143 19852928 ~ 19905935 (+) False LOC120553104
TU310649 lncRNA downstream 29942 20203341 ~ 20225185 (+) False LOC120553418
TU310674 lncRNA downstream 125335 20298734 ~ 20301441 (+) True G228989
TU310756 lncRNA downstream 266059 20439458 ~ 20448557 (+) True G229058
TU310762 lncRNA downstream 269268 20442667 ~ 20454788 (+) True G229060
TU310821 lncRNA downstream 389664 20563063 ~ 20565180 (+) True G229108
XM_039791788.1 mRNA upstream 99082 19923771 ~ 20047996 (+) True LOC120553417
XM_039791789.1 mRNA upstream 99816 19923771 ~ 20047262 (+) False LOC120553417
XM_039791188.1 mRNA upstream 241126 19882378 ~ 19905952 (+) False LOC120553104
XM_039791187.1 mRNA upstream 241126 19882382 ~ 19905952 (+) True LOC120553104
XM_039791385.1 mRNA upstream 477968 19631947 ~ 19669110 (+) False LOC120553210
XM_039792447.1 mRNA downstream 1052 20174451 ~ 20184363 (+) True LOC120553750
XM_039792448.1 mRNA downstream 11683 20185082 ~ 20190908 (+) True LOC120553751
XM_039791790.1 mRNA downstream 17529 20190928 ~ 20203930 (+) True LOC120553418
XM_039792449.1 mRNA downstream 39388 20212787 ~ 20260428 (+) True plxnc1
XM_039791216.1 mRNA downstream 113865 20287264 ~ 20298086 (+) True elk3
TU310593 other upstream 161430 19982248 ~ 19985648 (+) True G228924
XR_005638131.1 other upstream 338666 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other upstream 338666 19631947 ~ 19808412 (+) False LOC120553210
unassigned_transcript_1503 other upstream 687924 19459083 ~ 19459154 (+) True trnaq-uug_5
TU310402 other upstream 733374 19410490 ~ 19413704 (+) True G228784
TU310736 other downstream 209027 20382426 ~ 20391406 (+) False ucmaa
unassigned_transcript_1504 other downstream 1405914 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 1406505 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 1406853 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 1407098 21580497 ~ 21580607 (+) True trnal-caa_28

Expression Profile