RNA id: XM_039791217.1


Basic Information

Item Value
RNA id XM_039791217.1
length 2942
RNA type mRNA
GC content 0.52
exon number 17
gene id cdk17
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20301092 ~ 20354627 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCCTGTTAAACACAGCGTGGTGATTGATGGCAGCTAGCTCGCACCCCTCCCGTCTCGACAGCAGATCCACCTCCAGCCTCTTTAAACTGCTTTCACCGCCACACAAAACGACATTTTGGGGGTTCGGTCTCAAGCTCTTCGTCCTCACACCCCTCGTATCTCCCCGTGTGTTTCGGAGGATATTTCTTTTCTAACGTAGCGTTTGGAATCGAAACCAAACACAGACGGAGCTGTGTTTTAGGCTACTTCAGTGGGCGGATAAAGCGGAGGAGGGCATCCGGGCCTGGCTGCTCCGGAGAGTTGGCTTGAAACCAGGGAATTCACCATTTTCAGGCCGTGCGCTGCCCTGCTATGGAGAAGATGAAGAGGATTAAGAAGCGCCTGTCGTTAACACTCCGCTCCAGTCAGACCATCGACGAGTCGCTGTCTGAACTGGCCGAGCAGATGACCATCGAGGACGGCGGCACCAAGGACAGTGAGCCCTTCATGAGGAACGGCCGCCCCCCCACCTCCCACAGCATGCACTCCTTCCTGCACCAGTACACCGGCTCCTTCAAGAAGCCTCCGCTCCGCCGGCCGCACAGCGTTATCGGCGGCTCCCTGGGTTCCTTCATGGCAATGCCACGCAACGGTAGTCGTCTTGATATTGTGCACGAGAACCTGAAGATGGGCTCCGATGGGGAGAGCGACCAGGCATCGGGAACGTCTTCAGACGAGGTGCAGTCTCCGACTGGCGTCTGTCTGAGGAACCGCATGCACCGGCGGATCTCCATGGAGgaCCTCAACAAGCGCCTGTCGCTGCCCGCTGACATCCGAATCCCCGACGGTTAcctggagaagctgcagctcaGCAGCCCGCCCTTTGACCAGCCGCTCAGCCGGCGCTCCCGCAGAGCCTCGCTGTCGGAGATTGGTTTTGGCAAGTTGGAGACGTACATTAAGCTGGACAAACTGGGAGAGGGAACCTACGCCACAGTATTTAAAGGACGCAGTAAGCTGACGGACAACCTGGTGGCACTGAAGGAGATCCGGCTGGAGCACGAGGAGGGAGCGCCATGCACCGCCATCAGAGAAGTGTCGTTACTGAAGGACCTCAAACACGCCAACATCGTGACGCTTCACGACATCGTCCACACCGACAAGAGCCTCACGCTCGTCTTCGAGTACCTGGATAAGGACCTGAAGCAGTACATGGATGACTGTGGAAACATAATGAGCATGCACAATGTGAAGGTCTTCCTCTTCCAGATTTTGCGAGGGCTGTCGTATTGTCATAAGAGGAAAGTTCTCCACAGGGACCTGAAGCCCCAGAACCTCCTGATAAATGAGAATGGAGAACTCAAACTGGCTGATTTTGGTCTGGCGAGGGCCAAGTCTGTCCCGACTAAAACCTACTCCAACGAGGTGGTGACTCTTTGGTACCGGCCCCCCGATGTCCTCCTGGGATCCTCTGAGTATTCAACACAGATCGACATGTGggGTGTCGGTTGTATATTCTATGAGATGGCTGCAGGTCGGCCGCTGTTCCCCGGCTCCACCGTGGAGGACGAGCTCCACCTCATCTTCAGGTTACTGGGTACACCCACGGAGGAGAAGTGGCCAGGAATCTCCTCCATTGAAGAATTTAAATCCTACAACTTCCCCAAATACAAACCACAGCCGTTGATCAACCACGCTCCCAGGCTGGACGGCGACGGCATCGAGCTGCTGCTGGCTTTCCTCAGATACGAATCTAAGAAGAGGAATTCAGCTGAAGAGGCTATGAAACATTCCTACTTCAGGCAGCTTGGGACAAGAGTTCAGACGCTGCCCGAGAGTGTATCGATATTCACATTAAAAGAAGTGCAGCTGCAGAGGGACCCTGGCTACAGGAACTCCTACAACCCAGAGTCAGGTAACGGCAAGATCAACAGGAGGCAGAGCATGCTCTTTTAATAAAGAGGATGAAGAGAATGGTGTACTGCCCAGCTTCGTCATCACTTCCCACAAACCTCTCGCATGAGCCCACCTCCCCCTCGGagtgacccccccccctcttacctgcacacacacacacataaacatgcacacacacacacacacacctatctgAGCAAGTGACTCTGGGTTGAATCTATTTGGAGACTGTTTATTTattgggggagggaggggaggttGAATTTTTTTGCTGCTAAACTACTACTGTCTGTATTTAACAcaccgtgtgtgtgcgtgcgcgtgcatgtgtgtgcgtgtgtgtgtgtgtacaagatGTGAACTCGAGACGCCATGCACAGTTGAGCAGTCAGAAAGGTTACCATTGTTTTTCTTCTGACTACGATTCTCCGGCTTCGTTTGAGTTATAATTCCACTGATGTTGATGTCAGCGCTGTGATCCaagttgttgttcttgttgtcGTGCTTGGAGACCGAAcgctttcagtttttttttataaatatgtatatatatatatatatatatttgtaatttatgttttgtttttcttcgaGCTTCCGTGACTGAACTCTACAACATTTCCAGGTTTTGAAAGACTGGGACGCTAGATGGTCTTgatggggtgggggtgggggcggGGGGTATGTTACACTGAGGGTCAAAAAGCAGGATCGTGAGCAGATTGTGGTAACCATTTTAAACTGAGGGTTAAAGAAGCACACATAGAGTCCAATCAAACTGCGAGAACATGAAATCAACTTTTGGTTCTTTTGGACCATTCTTGTCTCAGCAATGGGACCAAAACTGAGGAGTTAGGGGGAGGCAAACAGAAAGGCGAGCGAAAAGCACAGTCGAAAGAGGAGAAATTCTGGAGCTGAACAGGAAGTTATGTGATGTCCCACAGGAAGCCAGCAAGCCTTCCCTAAAACCCCTCACAAAACTGCCAGGACTtcagtgctttaaaaaaaaaaaaaagaaagaaaaaaaaatgcaagctACACTTT

Function

GO: NA

KEGG:

id description
K15595 CDK17, PCTK2; cyclin-dependent kinase 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310618 lncRNA downstream 395149 19852964 ~ 19905943 (-) True G228946
TU310623 lncRNA downstream 419013 19877097 ~ 19882079 (-) True G228947
TU310627 lncRNA downstream 442229 19858103 ~ 19858863 (-) True G228949
XR_005638134.1 lncRNA downstream 582680 19717222 ~ 19718412 (-) True LOC120553214
TU310533 lncRNA downstream 731733 19550617 ~ 19569359 (-) True G228885
TU310764 lncRNA upstream 1009 20355636 ~ 20357563 (-) True G229062
TU310777 lncRNA upstream 27838 20382465 ~ 20391508 (-) True G229071
TU310783 lncRNA upstream 79528 20434155 ~ 20437536 (-) True G229076
TU310788 lncRNA upstream 87693 20442320 ~ 20450128 (-) False G229079
TU310789 lncRNA upstream 87693 20442320 ~ 20450128 (-) True G229079
XM_039791213.1 mRNA downstream 14505 20272526 ~ 20286587 (-) True hcfc2
XM_039791214.1 mRNA downstream 14506 20272526 ~ 20286586 (-) False hcfc2
XM_039791787.1 mRNA downstream 28948 20261404 ~ 20272144 (-) False cep83
XM_039791786.1 mRNA downstream 28955 20260025 ~ 20272137 (-) True cep83
XM_039791783.1 mRNA downstream 28960 20260025 ~ 20272132 (-) False cep83
XM_039791001.1 mRNA upstream 39439 20394066 ~ 20409676 (-) False mcm10
XM_039791000.1 mRNA upstream 39439 20394066 ~ 20409676 (-) True mcm10
XM_039792012.1 mRNA upstream 55568 20410195 ~ 20430496 (-) False optn
XM_039792011.1 mRNA upstream 55568 20410195 ~ 20420877 (-) True optn
XM_039791833.1 mRNA upstream 101048 20455675 ~ 20530744 (-) True camk1da
TU310704 other downstream 178753 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 461790 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 461790 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 493994 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 848064 19452946 ~ 19453028 (-) True trnal-cag_24
TU310933 other upstream 603030 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 709064 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 1416461 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 1416509 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 2750133 23104760 ~ 23239573 (-) True G229716

Expression Profile