RNA id: TU310764


Basic Information

Item Value
RNA id TU310764
length 1846
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G229062
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20355636 ~ 20357563 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGTGTCTGTGGGCGACTGGTGAAGGTTTGAGCGTAAGTTGGTACAGCACTCTGAAGAACGAGAAGTCAAGGAAACGACACAAATGTTAACAagtggcagcaaaaactgtcctgtacactgtcctgtgactgcTATGACTGTCCCGAGACAgtcactgtcctgtacactgtcctgtgactccatgactgtcctgtacactgtcctgtgactccatgactgtcctgtacactgtcctgtgactccatgactgtcccgggacagtcggacactgtcctgtacactgtcctatGACTCcaagacactgtcctgtgactccatgactgtcctggtACAGTcagacagtgtctgggagtcacaggacagtgtacaggacactactaacagaacaggacagtttttgctgccactgctgctgcaaATGTTTCAGCTGCCCATGTCCAGGAGTGCTCTGTGGGTCGATGAACTCTCCAACTGGAAAAAAAGGACAGGGAGAGCCACACAAGGTCCACAAAACATACTGATTTATGCTGATTTTATCTTTGAACATCAAAACCTTCAAATAGATTGAAAGCACATATGacctctttatatacagtctacgGTTACCACaatttgaaaagtaaaaaaaaaaatattaatgcaTTCTAAATTTTAATTGAacttatgtatatgtatatgaatAACTTATGACTGACCTAAAAACAGACAGACTAGCCTTTTAAGTTCTTTAAGTTAGCGTCTCCACCAATAGGAATAGGCTGTTCTTGTAGTAAAGAAACCATCTATTTTGTATAATGTATATTTTAGTTTAGCTAGACATGGCTATGCAACTAGACATGCCACAAGAGGTAACTTTACTTTACCAAAAGCAAGGACGAACACGGTCATATAGAGCAATGCAAGAATGGAATGTGCTACCTAACCAAAGTAGGCTATACCAGAAAGCAGTAAATCAGATGTAAACTTTGAAAGTTTAGTTAAGAAATATCTGTTGACTAGAGAAGTTGAGTCGACACATAAACTACATTGGTTGAGGTTAAACAAAATATGAATGTGAGACGTGTCCTGAGAGGGCGAAACAGATGTTTGACGACAGCATGGTGTAACTGACTTAAAAAgtgttaaacattaatatggAATGCCCTGTGACCGCACTAGTGGAGATGTGGCTGTCCTTATCTTATGTGTGTACTTTTGTTGTTATCATATTATTTGTGTTATGAAATGATAATGTATGTTTAGTTTCTGTCTTATAAATTTACTGTTATGTATTGTTTAGGATGGTGGAGACGAGGATCTATATATCCTACGATATAGCTGGATGAAAAACGATATAGTTCGTATTTCTATGGATGAAACACAATTTCAGAACCGTAGCCTACATAACGTCACTGTTACTTAACCTATAAGTGCAAGAAGTAAATTGACGTCAATAAAGCATTCATAAACAATAATAGTTAGCATTAAAAATGACTCCTGTATTGCTCCTCATTTTCCCGGAGGCCTGCAGTACACCGCGGGACCCCGGTCTAGTCTACCAGAGCTGTCCGCCGTTAGGTGCGCAGCAATCGGATAACGTCTTAGCCTGTTCCGCTCTGTGCAGCCCCGAATCCCCCGATGAGCCAACATAAACAAAGCCGAACACAAGGATACAATCGTGGCAGATGATCGTTCAAGGTGATTGATCATCAGTCTGAGTCTTTCCGCAGCCCGAGACATTTTCCCGTCTGGTTACTTTATCCCGGTGTGATCCTGTAGGCTACATATGGATAACTAGAGAAAGTGGGTTAGACGTCTCGTACGTCTCTTACAGGCTACATCCATGGGTTAGGCAAGGGCAaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310720 lncRNA downstream 54198 20301102 ~ 20301438 (-) False cdk17
TU310618 lncRNA downstream 449693 19852964 ~ 19905943 (-) True G228946
TU310623 lncRNA downstream 473557 19877097 ~ 19882079 (-) True G228947
TU310627 lncRNA downstream 496773 19858103 ~ 19858863 (-) True G228949
XR_005638134.1 lncRNA downstream 637224 19717222 ~ 19718412 (-) True LOC120553214
TU310777 lncRNA upstream 24902 20382465 ~ 20391508 (-) True G229071
TU310783 lncRNA upstream 76592 20434155 ~ 20437536 (-) True G229076
TU310788 lncRNA upstream 84757 20442320 ~ 20450128 (-) False G229079
TU310789 lncRNA upstream 84757 20442320 ~ 20450128 (-) True G229079
TU310808 lncRNA upstream 177722 20535285 ~ 20535597 (-) True G229095
XM_039791217.1 mRNA downstream 1009 20301092 ~ 20354627 (-) True cdk17
XM_039791213.1 mRNA downstream 69049 20272526 ~ 20286587 (-) True hcfc2
XM_039791214.1 mRNA downstream 69050 20272526 ~ 20286586 (-) False hcfc2
XM_039791787.1 mRNA downstream 83492 20261404 ~ 20272144 (-) False cep83
XM_039791786.1 mRNA downstream 83499 20260025 ~ 20272137 (-) True cep83
XM_039791001.1 mRNA upstream 36503 20394066 ~ 20409676 (-) False mcm10
XM_039791000.1 mRNA upstream 36503 20394066 ~ 20409676 (-) True mcm10
XM_039792012.1 mRNA upstream 52632 20410195 ~ 20430496 (-) False optn
XM_039792011.1 mRNA upstream 52632 20410195 ~ 20420877 (-) True optn
XM_039791833.1 mRNA upstream 98112 20455675 ~ 20530744 (-) True camk1da
TU310704 other downstream 233297 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 516334 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 516334 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 548538 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 902608 19452946 ~ 19453028 (-) True trnal-cag_24
TU310933 other upstream 600094 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 706128 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 1413525 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 1413573 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 2747197 23104760 ~ 23239573 (-) True G229716

Expression Profile