RNA id: TU310893


Basic Information

Item Value
RNA id TU310893
length 2133
lncRNA type inter_gene
GC content 0.46
exon number 6
gene id G229162
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20681092 ~ 20683865 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcaattacgcgacgtgaacatcatcgaaaagcagggtgttggggggaaatcacttttttttttttttttctcattaaaccgcagtttttgcaagttcccccaatttttgcaagttcccgcatattccatcgcattttttaagaaaacgtgccgcataatcaaggaattttgcccgcaacaatcacaaaaaaactgtaaaaatgccCTGTATTTTAGGTTTGTTAAGCGTGAAGGTgtccattggttgttgactgtGTTTGTACCTCTCCAGCAGGGTAGCGATAGTAGTATTTATCCTCATCTCTCAAAGCAAACTCCTCCGGGAATTTCTCCTTCATCTCATCATACGTCATCTCTTCACACATTCCCTaaaaagaacaaagaagaaaaatataatatttcaggttggggaaaacaaaaaaatatagctGTGTGATGTGTAGAGCTGCAACTATTCCAAATTTTACTGTATAATTAATTGCCTCAGAAATCATTGCGATtgacaatataattgtctctttcagtcaaattttaaattatttatttatgtattacttttgcaaacaaattcCCAGGATACATCCTTTGGTTATATTACTGTTATGTGACCcggataatgtaataacacaaatacacagcctatgaagtaaaccacgcctctttattatcataaaactatgtatttttttctgaaatgcacCTAAAACTTAgttaccatcaacagtcataccccTAAGGACCTCAGCTAATGTAAGCAAtgaattgcggttaaacaaagaaacagcgATTATGTAATAAACATTACAGGCctagtagtctcgcattgccagaccttcctccacagcgctgcggaggagggtctggctggtccacacagcattctgggatgggagaaaaacgtgctctggtttactggcattttctgaaaccaatcacaatcgtcttgggcggcgccgctgcaaaatagcctcgggaaggaacttgttttgggtggaacatgtgtacgtttaaaagttgttttagtcgtgcgagagaaaactcagattggacagagattctagctagctgtctggatttaccctgcagagatctgaggagcagttaaccatagtcctcagaaatccgcctgagtttagaacgccaacacaaagaaagaggaaggggacagacatccggcctaaatgaaagacatccagcggaattttgggcagcacctgaacaatcctggaagtggaacctCGCGGATATAGACTACAGGCCCGGTGATGTGGCGTCATAGTGCGCGTTTGAGTGACACTCACAGCGTCTATCTCGTTGAGAGCCTTCCACTGTTCGTACGGGACTCCCAGGTGCTCTGCGGTCTCGATGCTGCGACACAGCTGGCTGCTCCAAACCTTGAGAtccttctgctgctgctcttccaCAAACCGAGCCAGGGCAGCCGAAAACTACAGCAGGGAGGGAACATGTCTTTAGCAACCGAAGTTCATCGATCATGAGGTTTAAAATCGTGTCGTTTTGTCGACCGTCTGCTTTCATGATCTGTTTTATGTTCCTGTCTGTCGCTGTTGGTACCTGTTTGCCCCGCGGCGAGAGGCCTGCGTCCCCGCCCAGCCGGCCCTCCACGTTGTCGGTGCTCTCTCCGTGCCGACACAGGTAGATGGTGCGTGGCTGGACGTGGATGTTCATCAGGTAGTAGACGATCTTGCTCTGGATGTGGTCCTGGATCCGGTTGACGAGGAAGCGCCGACCCACGTCTATCACCTTGATGAAAGAGAGATCCCTGTCGTACTGATTGGGGTCCAGGGGTTGGTAGCTGGTTTTGTAGCATTCGATTCTCCTCTGGAAATCCAACATGGCGTCGTTTTTGTTGCAGTCCCGGTAGTCTGGACACGACACCTTCACTTCCATGATGTTCGACGCGATCACGCTGGGATCGTCGCACACCGACTCGATGAAAAAGATCTTGAAGCCATTCTCACTGCCAAACTGAAGGATCATGTCTCGTCTTTCTCGCGTCGTGTTTGTGGCGTCGAAGACCGCTACTTGGCCTCCCTCCTCCTTCAAATAGGATTTGACATCCCTCAAGGCTGCTAAGGCACATTGCTGTCTGATTTTCACGGCGCACTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310883 lncRNA downstream 12206 20668658 ~ 20668886 (-) True G229154
TU310866 lncRNA downstream 53584 20626079 ~ 20627508 (-) True G229140
TU310822 lncRNA downstream 131368 20549498 ~ 20549724 (-) True G229109
TU310812 lncRNA downstream 133595 20546893 ~ 20547497 (-) True G229099
TU310811 lncRNA downstream 138156 20541188 ~ 20542936 (-) True G229098
TU310899 lncRNA upstream 18846 20702711 ~ 20703069 (-) True G229166
XR_005638201.1 lncRNA upstream 92538 20776403 ~ 20855266 (-) True LOC120553789
TU310900 lncRNA upstream 95218 20779083 ~ 20779370 (-) True G229167
TU310901 lncRNA upstream 95818 20779683 ~ 20779908 (-) True G229168
TU310905 lncRNA upstream 183435 20867300 ~ 20867529 (-) True G229172
XM_039792470.1 mRNA downstream 40370 20620545 ~ 20640722 (-) True il15ra
XM_039792475.1 mRNA downstream 42991 20620545 ~ 20638101 (-) False il15ra
XM_039792473.1 mRNA downstream 42991 20620545 ~ 20638101 (-) False il15ra
XM_039792472.1 mRNA downstream 42991 20620545 ~ 20638101 (-) False il15ra
XM_039792474.1 mRNA downstream 42991 20620545 ~ 20638101 (-) False il15ra
XM_039792489.1 mRNA upstream 241308 20925173 ~ 21008235 (-) True ano2b
XM_039792490.1 mRNA upstream 241308 20925173 ~ 21008233 (-) False ano2b
XM_039792491.1 mRNA upstream 241308 20925173 ~ 20991788 (-) False ano2b
XM_039792098.1 mRNA upstream 338470 21022335 ~ 21046386 (-) True pik3cg
XM_039791070.1 mRNA upstream 379826 21063691 ~ 21145533 (-) False ptprz1b
TU310704 other downstream 558753 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 841790 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 841790 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 873994 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 1228064 19452946 ~ 19453028 (-) True trnal-cag_24
TU310933 other upstream 273792 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 379826 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 1087223 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 1087271 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 2420895 23104760 ~ 23239573 (-) True G229716

Expression Profile