RNA id: TU310901



Basic Information


Item Value
RNA id TU310901
length 226
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G229168
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20779683 ~ 20779908 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gggcgttttcacacatacctcgtttggtccggactttcggactttttagtttgatccgaaccaaaattaaaggtgtgaaacctcccccggaccatggtccggatcaaaagaccaaattttggtccgacaaaaagaggtggtctcggtccggaccaaactgaaccatggtccggttcgttgatagtgtgaaagcattttttggatggttcggactttcggaccaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU310900 lncRNA downstream 313 20779083 ~ 20779370 (-) True G229167
TU310899 lncRNA downstream 76614 20702711 ~ 20703069 (-) True G229166
TU310893 lncRNA downstream 95818 20681092 ~ 20683865 (-) True G229162
TU310883 lncRNA downstream 110797 20668658 ~ 20668886 (-) True G229154
TU310866 lncRNA downstream 152175 20626079 ~ 20627508 (-) True G229140
TU310905 lncRNA upstream 87392 20867300 ~ 20867529 (-) True G229172
TU310982 lncRNA upstream 239351 21019259 ~ 21062436 (-) True G229235
TU310983 lncRNA upstream 239351 21019259 ~ 21062436 (-) False G229235
TU310999 lncRNA upstream 418560 21198468 ~ 21199259 (-) True G229248
TU311069 lncRNA upstream 484593 21264501 ~ 21264812 (-) True G229296
XM_039792470.1 mRNA downstream 138961 20620545 ~ 20640722 (-) True il15ra
XM_039792475.1 mRNA downstream 141582 20620545 ~ 20638101 (-) False il15ra
XM_039792473.1 mRNA downstream 141582 20620545 ~ 20638101 (-) False il15ra
XM_039792472.1 mRNA downstream 141582 20620545 ~ 20638101 (-) False il15ra
XM_039792474.1 mRNA downstream 141582 20620545 ~ 20638101 (-) False il15ra
XM_039792489.1 mRNA upstream 145265 20925173 ~ 21008235 (-) True ano2b
XM_039792490.1 mRNA upstream 145265 20925173 ~ 21008233 (-) False ano2b
XM_039792491.1 mRNA upstream 145265 20925173 ~ 20991788 (-) False ano2b
XM_039792098.1 mRNA upstream 242427 21022335 ~ 21046386 (-) True pik3cg
XM_039791070.1 mRNA upstream 283783 21063691 ~ 21145533 (-) False ptprz1b
TU310704 other downstream 657344 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 940381 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 940381 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 972585 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 1326655 19452946 ~ 19453028 (-) True trnal-cag_24
TU310933 other upstream 177749 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 283783 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 991180 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 991228 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 2324852 23104760 ~ 23239573 (-) True G229716