RNA id: TU310941


Basic Information

Item Value
RNA id TU310941
length 397
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G229205
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21037948 ~ 21062435 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggaaaaaaatcccccaaaaaaataaataaaaacgtgAAAAGGGAAGTTCTATCCATGCAGAGTGTAAAGTGAAGGCAGGATGGGGATCTTATTAGGGTTGAAATGCTCGACAGTTCTAcagaaagtaaaagaaaataaaaattaataaaatacacCCAGGGTGGGCACTCGTATTCTCACTGCATAACGAGGTTTATTCTTAATGCACTATATACACTTTATCTTATGTGACTGCTACAGTATAATGTGTCATGACAAATAATATGATTAcatagaaatatatatttttggtttGGACTTAATCTTTGTTAACCTTCCGTGGTCTTTACCATCATGTCATGTACAGGTTGATCAGGGGAGACAATGCAATACAAtgtattataatataaataaaag

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310915 lncRNA upstream 112889 20923948 ~ 20925059 (+) True G229182
TU310845 lncRNA upstream 430418 20607232 ~ 20607530 (+) True G229130
TU310821 lncRNA upstream 472768 20563063 ~ 20565180 (+) True G229108
TU310762 lncRNA upstream 583160 20442667 ~ 20454788 (+) True G229060
TU310756 lncRNA upstream 589391 20439458 ~ 20448557 (+) True G229058
TU310964 lncRNA downstream 85858 21148293 ~ 21150281 (+) False LOC120553023
TU310977 lncRNA downstream 158013 21220448 ~ 21220812 (+) True G229233
TU311018 lncRNA downstream 201961 21264396 ~ 21264699 (+) True G229263
TU311019 lncRNA downstream 202977 21265412 ~ 21271111 (+) True G229264
TU311091 lncRNA downstream 365868 21428303 ~ 21429238 (+) False arid2
XM_039792500.1 mRNA upstream 131127 20897219 ~ 20906821 (+) True LOC120553788
XM_039792497.1 mRNA upstream 173330 20816119 ~ 20864618 (+) True ntf3
XM_039792498.1 mRNA upstream 173330 20817579 ~ 20864618 (+) False ntf3
XM_039792499.1 mRNA upstream 173330 20859206 ~ 20864618 (+) False ntf3
XM_039792496.1 mRNA upstream 348002 20681678 ~ 20689946 (+) False pfkfb3
XM_039791072.1 mRNA downstream 85832 21148267 ~ 21150351 (+) True LOC120553023
XM_039791076.1 mRNA downstream 121451 21183886 ~ 21219226 (+) True zgc:162331
XM_039791075.1 mRNA downstream 136071 21198506 ~ 21219226 (+) False zgc:162331
XM_039791078.1 mRNA downstream 136071 21198506 ~ 21219226 (+) False zgc:162331
XM_039791879.1 mRNA downstream 238985 21301420 ~ 21304922 (+) True fgfr1op2
TU310736 other upstream 646542 20382426 ~ 20391406 (+) False ucmaa
TU310663 other upstream 864549 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 864549 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 1052300 19982248 ~ 19985648 (+) True G228924
XR_005638132.1 other upstream 1229536 19631947 ~ 19808412 (+) False LOC120553210
unassigned_transcript_1504 other downstream 516878 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 517469 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 517817 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 518062 21580497 ~ 21580607 (+) True trnal-caa_28
unassigned_transcript_1508 other downstream 518307 21580742 ~ 21580852 (+) True trnal-caa_29

Expression Profile