RNA id: XM_039791072.1


Basic Information

Item Value
RNA id XM_039791072.1
length 1377
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120553023
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21148267 ~ 21150351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCACGGCGCGACAGGGAAGTGCAGCTACTACGCGCGCCCTTCACTTTACAGTCGTTACAGTACCTGAACACCCTTGCAAAAGTCTTGTGTTTGTAGTTCAATAACAGCATTGCTCTGATTTCTGGGGTTTTATGAAGTGACAGAAACTAACACCAGCAGTGGTTGGGACAAATAAATCATTTTTGGAGGTTTTAGCGTTTAATTCGGATCAGGCAGCGATGGCGGCTCCAAACTCTGCAGAAAGGAAGGCATGCTGGGACGCCAGGGACCAGCTATGGAAATGTCTGGATGACAGTGGTGACAAAGCTGCCTCCTGCCAGAAGTTCCAGAGCAAGTTTGAGGCAAATTGCCCCGCTCAGTGGGTGAAATATTTCACCAAgaggagagacttcctgaaaTACAAAGATAAGATGCAGACAGAAGGATTCACACCTGCCGAAGGCCCCCAGCAACCTTCCTAAATCACTGGACGGCACACTGACTTTCAGCCTTATTCAGACCACGGCCAGAGGGGCAGGACTTTATTATGGACCTGAACTTCACctttatcattatttatttgtacagAGATAAAAGCTACACACATTAGCAGCTCCAAGCGGCAGAATGAGCGACCTGTTTGGGCTTATTTGAGCTTCCCTCCTCAGAAATCTGTGACGTCAGCTCATTTTAACCAAcccagctgagagagagagagagagagaaactggaTGTAGACCGTTGGGATAAAGCCTGTCATTGGCTGCCTATTTCAGCTggttttctcctcctcttccgtAATCTGTTTTGTAAGGGCACCGTCGCTGCATTTGGGGCTTAGCACCGccaaagatgattgtgattggtttaaagaaatccaAACCATCCAGAGCGTTTTGTCCCCTATCGCAGAATGTTAACTCGTGCGCTGTGGTGACAGGTCtgggcaatgcaagactagatTTTGACCTggaaatgacatgtaatgtccCTGTGGAACTTTACTAATGCCACTTGGAATAGTTGTGATCAGTGCAACGCTTACACAGACGcagtacatgcacacactggGTCTTATGTCTCATTCTAACACTGTTCACGAGGGATTTTCTGCGGTtgttttcagtgaaagcatCACCTCCTTTGCATCCGGTAGCAGCCGCAACATTCTGTGTGCAGAACACGGGGTAAAGTTCTACATCTGCGTGGAGTTTGGGTTGAAGTCACAAGTCTTGATCAATTCAATTATGCCAGTGTGATTTACAAATAAATGCCGATCTTTAGCGTTTGCTGATACTTAGCGTTTTAATTCTGGGACAGTTCCTCATTAGGTTAAATCTCAAGTGTGATTGACTTGTGgtgttttatgtaaataaaaaagaatacatacatacaa

Function

GO: NA

KEGG:

id description
K18179 COA6; cytochrome c oxidase assembly factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310941 lncRNA upstream 85832 21037948 ~ 21062435 (+) True G229205
TU310915 lncRNA upstream 223208 20923948 ~ 20925059 (+) True G229182
TU310845 lncRNA upstream 540737 20607232 ~ 20607530 (+) True G229130
TU310821 lncRNA upstream 583087 20563063 ~ 20565180 (+) True G229108
TU310762 lncRNA upstream 693479 20442667 ~ 20454788 (+) True G229060
TU310977 lncRNA downstream 70097 21220448 ~ 21220812 (+) True G229233
TU311018 lncRNA downstream 114045 21264396 ~ 21264699 (+) True G229263
TU311019 lncRNA downstream 115061 21265412 ~ 21271111 (+) True G229264
TU311091 lncRNA downstream 277952 21428303 ~ 21429238 (+) False arid2
TU311140 lncRNA downstream 353293 21503644 ~ 21613229 (+) False G229352
XM_039792300.1 mRNA upstream 89185 21047937 ~ 21059082 (+) True LOC120553657
XM_039792500.1 mRNA upstream 241446 20897219 ~ 20906821 (+) True LOC120553788
XM_039792497.1 mRNA upstream 283649 20816119 ~ 20864618 (+) True ntf3
XM_039792498.1 mRNA upstream 283649 20817579 ~ 20864618 (+) False ntf3
XM_039792499.1 mRNA upstream 283649 20859206 ~ 20864618 (+) False ntf3
XM_039791076.1 mRNA downstream 33535 21183886 ~ 21219226 (+) True zgc:162331
XM_039791075.1 mRNA downstream 48155 21198506 ~ 21219226 (+) False zgc:162331
XM_039791078.1 mRNA downstream 48155 21198506 ~ 21219226 (+) False zgc:162331
XM_039791879.1 mRNA downstream 151069 21301420 ~ 21304922 (+) True fgfr1op2
XM_039792450.1 mRNA downstream 155263 21305614 ~ 21326282 (+) True tm7sf3
TU310736 other upstream 756861 20382426 ~ 20391406 (+) False ucmaa
TU310663 other upstream 974868 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 974868 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 1162619 19982248 ~ 19985648 (+) True G228924
XR_005638132.1 other upstream 1339855 19631947 ~ 19808412 (+) False LOC120553210
unassigned_transcript_1504 other downstream 428962 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 429553 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 429901 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 430146 21580497 ~ 21580607 (+) True trnal-caa_28
unassigned_transcript_1508 other downstream 430391 21580742 ~ 21580852 (+) True trnal-caa_29

Expression Profile