RNA id: TU310983


Basic Information

Item Value
RNA id TU310983
length 2186
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G229235
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21019259 ~ 21062436 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcttttatttatattataatacaTTGTATTGCATTGTCTCCCCTGATCAACCTGTACATGACATGATGGTAAAGACCACGGAAGGTTAACAAAGATTAAGTCCaaaccaaaaatatatatttctatgTAATCATATTATTTGTCATGACACATTATACTGTAGCAGTCACATAAGATAAAGTGTATATAGTGCATTAAGAATAAACCTCGTTATGCAGTGAGAATACGAGTGCCCACCCTGGgtgtattttattaatttttattttcttttactttctgTAGAACTGTCGAGCATTTCAACCCTAATAAGATCCCCATCCTGCCTTCACTTTACACTCTGCATGGATAGAACTTCCCTTTTcacgtttttatttatttttttggggggtttttccctttattatataggACAGTGGATAGAcgggaaagggggagagagatgggggatgacatgcagcaaagggcagcaggtcggattcgaacccgggccgatTCCTACacggggcgcacgctcttaccgGGCTCCCACGTCCCCGTCCCTTTCCAAATGATGTTCCATGTTTGCAGAGGTTGTCGGTAATGAGATAATATCACATAAGCGAGGCTGGGTTTATATTTGGGGTAGGATTTTTACTATCTTGATGACAGATGTTTTGCTTAGCCAGACCTTTGGTTCAAGTATAAAGGGGTTCTGgacattttttaaacacaattgatggcaaaaaaaaaaaaaaacgccataATGCCGTGTAGGCTTCATTTTAAGCATTAACATTTTAATCCAATATCAATTTTCAGCCTCATGTCCCATTGTACCCATAAGTACATTTTGAGGGGCTCGGACATGTTGACAGTACTCTTTGTTTTAAACTCAAACTGCATGAGGATCGATTAGCAAACATTTCCCTAGACCTTCATCATCGAGAACTGAATGGCAACATTATTCCAGTGTGCAAGTCCACCAATATCCTCATTTCTGATAATATCAAATTAATATGGCAATGAGTTCACTGTTTGCAATATCTGTGACCATATCAACTTCCCTATGCCCTTTAATCTCATCGGTCTCTTCCCCTTCCTACCGGTCACAAAATGTTTAAACATTTTTCAGTGTACACACATACCTAAAAATGCTTTTATAATATTTTCCTATTTTTGACATAAAGTAAAGCTATTAAAACTCATTTTGGTAAATAAACTTCAAGCAACAGCCTAACAGCTATgggtggtttttttttatgcttttgctGGATATGATTTTGTCAGGGAAACAAACaagagaaactgagaaaaacttatttccatttcaCGAAAGCCAGTGGAAGCCATCTTTCTTTGGAAACGTCTTGAGTGAAGCTCAATCAGGCCTCCCCTGTATTAATGTCACTGattatacacaaacatactgtactttgataaaaaaaaataagtattaTGGCACATAAAGATGTCAGCATCAAGGACACTTCAGGTGTGGAGATGTGGCTGACAAATCCAAATCAAATCTTCGTGTCATCTAGCTTCCTGTGCTATAATGGCAATTTTCTGTAACATGCCATTTGATGTCCTTTGTGACAATacatattaaaggtcccatggcatgaacatttcactttatgaggttttttaacattaatatgagttcccccagcctgcctatggtcccccagtggctagaaatggcgataggtgtaaaccgagccctgggtatcctgctctgcctttgagaaaatgaaagctcagatgggccgatctggaatcttctccttatgaggtcataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggcccacccatgaaagagagacatcatggctttcaaacaagcaaagtggcagttggtcaaggccacatccccaccctccaccttgccccccctctctcctcctcaatagctacagacacagaaatggcacatcctaaggaaagctcattgtgggactggctctagtggctggaattctgcaccaaggctcaatttcgggaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattagggggccactaaggtttatataaaagcatccaaaaagtagcatgtcataggacctttaacagaAAACTTGACACCAATGAGACTGTCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310905 lncRNA downstream 151730 20867300 ~ 20867529 (-) True G229172
XR_005638201.1 lncRNA downstream 163993 20776403 ~ 20855266 (-) True LOC120553789
TU310901 lncRNA downstream 239351 20779683 ~ 20779908 (-) True G229168
TU310900 lncRNA downstream 239889 20779083 ~ 20779370 (-) True G229167
TU310899 lncRNA downstream 316190 20702711 ~ 20703069 (-) True G229166
TU310999 lncRNA upstream 136032 21198468 ~ 21199259 (-) True G229248
TU311069 lncRNA upstream 202065 21264501 ~ 21264812 (-) True G229296
TU311129 lncRNA upstream 388027 21450463 ~ 21453152 (-) True G229351
TU311131 lncRNA upstream 388027 21450463 ~ 21453152 (-) False G229351
TU311122 lncRNA upstream 398640 21461076 ~ 21461460 (-) False slc38a2
XM_039792489.1 mRNA downstream 11024 20925173 ~ 21008235 (-) True ano2b
XM_039792490.1 mRNA downstream 11026 20925173 ~ 21008233 (-) False ano2b
XM_039792491.1 mRNA downstream 27471 20925173 ~ 20991788 (-) False ano2b
XM_039792472.1 mRNA downstream 381158 20620545 ~ 20638101 (-) False il15ra
XM_039791070.1 mRNA upstream 1255 21063691 ~ 21145533 (-) False ptprz1b
XM_039791069.1 mRNA upstream 1255 21063691 ~ 21145533 (-) False ptprz1b
XM_039791071.1 mRNA upstream 1255 21063691 ~ 21138485 (-) True ptprz1b
XM_039791073.1 mRNA upstream 90765 21153201 ~ 21183826 (-) True slc13a4
XM_039791074.1 mRNA upstream 91141 21153577 ~ 21183856 (-) False slc13a4
TU310933 other downstream 61039 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 896920 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 1179957 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 1179957 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 1212161 19733102 ~ 19807098 (-) True G228934
XR_005638087.1 other upstream 1255 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 708652 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 708700 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 2042324 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 2629585 23692021 ~ 23711795 (-) True LOC120553170

Expression Profile