RNA id: TU311019


Basic Information

Item Value
RNA id TU311019
length 5504
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G229264
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21265412 ~ 21271111 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGATACATATTATTAGCTAATTCACGGAGCGCTGGGCTAGCCGAGGCAGAGACCACTTGCATCTAAAACTAGATTCTAGATGTGATCTGCTTTTATTCTTTAGGTTTGTGtcaacagctttttttttttcttctttttttcaaaggaTAAATACACATTTACCTACTCTCCCACCGAGGGAAGCAACGCCTCTCAACATCAATTATGAAATATTATGCGACACTGATCCGAACAACACAAAGGTGGAGTCAGTGAGCTGGTTTGGTCCATCAGAAATGACTTGTCTAGCTTAACTCGTGATGAAAGGGAAACATTTGCTGCACTCTTCTCAACCTCGCGCCGAAATTAAGTCCCAACCATTGAGCTCCCTTTAGATAAAGTGACACAGTAATGGATTTCAAGTCATCTTGGACATATACAGGATTATAGAATTGTATGGATCCCAAATACAGAATTAaccctacttttttttttaaatctcatgTGCACCTACTTCTGAAGGAAATAAAAGTGTAATCATTACAACACAGAACATGAGTTTGACATCACCTCACAACAAAAAGCACTGAGTATCGACTTCCTGGTTTTGTCCCTAGCGGTGGCACTCACACACTAGTTTCTCATGAACAATCTTAACTATTTGGCTGTGAAACCGTGTGAATACAGCAGTTTGGCTTTTCTCAGGTTTGTGTTCCAGTGATTGCACACAACCAGGAATCTGCAGCGGTaaccataaaaaaacaaaatcacccCCCCATCATGCATCTGTCCTGCTGCGGTCTACTAGCAGTAGCAGGTAGGAAGTAGGATCTTTCTTGCAGACTGGTCTTAGATTCGATGGCGTTTGTATTTGGGTTAGAATCACACATTTGTATTTTCATTATGGGCAAAATACTGGCCTATCAAGATTGTCCATCTGATGTGATGCTTACTGTTTGACTATTATCTTCTGTTTGTAACTAAAGGGGCACTCCACTGTTTTTTTCACAGCTCAGTTCACTCATCATGTCACGCCCACATATCATGGGGCGTACTACTCAGCCCGTGAAAATAGTTGAATGGCTTCTTCTGTCGCTCTGGATGGAGTGCTCTTaactcaaaaataaaaaaaaataaaaaaaatgaccctGATGAGATCATAGTGATGTCATAAGGGTTAACTCTGCTTGGGTTGAGAGACTATTTTTAACAGAAAGCCTGCATTATATATGGGTATAAGAGTTTGAAAGACAAAAGGCATTTACTAGACAGAAAGGGGTATTGAGAGGCGTAGTCCCTCCCCTTCTGGTGGACCACCAGGGGATCTTATTTTGGGAAAAACATGTATGGTtgtgagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcgtacCAGGACATACTCACACGAGCAATGGGCCCACTCGTTCTTTGGCTTCCCGGCTGATAAAAAGACGCTGGATGAAACTAATcagtaagataacgttacatttgTGCGTGGAACATAGCTAagttacctagctagctagctagctagcaaacaaTGATCTGTCACTTGCTGTTCACTATCGTACAtttttagatttgtcTCTGCTTTACAGAGGTGCTATACTAAATCActggagtgcccctttaaatTCTAGGGAAACCAATTGAGATATAAAAAAATCATCCAATTTAAATATACTCAATATTAGCACAAAATCTCTTCTCATCTATTAACAAACATaataaataatgcaaaaatataCACATCAGTCAACCCTCATTTGTACATTGCTTATGCAACTCTTACAAGTCTTACAGGTGCGTTCTTGGCCAACTGTATCAGGACTACGTGGATGAATtacagttaaacagttaaacagATCAAAAATAAGAAGAGAGACTGGCCCAGGTCTATTATAATACACCGCTCTAACTGAACAAACTGCAAGACCCTTACTTTCTCTATCAATTCCTCAGAAAATAGCACCAACATCAGTTTAACATGGGAACATGGGACGGCTACAGCTAAACTAGTCCGGTTATGGTAAAGTCCTCAGTGTatttcctttccctgcatgTACATACATTTATAGCTTGCATTTTGACACTTAACAGATGTGCTAACTGACAAACATCTGTCTCTGGCTCACTCATTTTCTTGACAAGTGTAGGAACAGAAATTGCAAATCATTCCATAACCAAGTTTAGCTCTCTTGGAAaggtgattattattattatttttttttttaaaaggtagtTTGAAGTTAAGTGCAGTAAGCGACAGCTACATCTGAAGGTGTTCAGATCACGACGTGTGATGATCAGAGTTCTTTGGTAACTATGTTGAGCGCTGTGTGTAGTCACAACTCTGAGCAGACATGGTGGTTAAATGGTTTGTTTTGTTGAGTAAGACAGGCACGGCATTAGCTTTTTAGGGTCGGGGGAATAAACACGTTGAATGGTTACTTAATTCAAAATGAACAAAGACATTTTAAGCACGTCGAGGACAAAAAGCATACACGTCTAGGATATCCACCATGTTAATCTATTCTTATTTACCTTCCATTTCAGTTTAATCTTTTACTTGACAAACCGAGACACGGTTCATTGCTTTTGCCTTGACCCGTTCTTTTTATGAGGCCCAGCTATAAAAACCTGCCATTTGTTTATACTGCCTTTGTGAAGTCACAGTTTTATCACACTTATCACTCCACACGTTTTACACACCAAATACAACCGACCCATCAGGGCTTTCTATTTGCTTTAGGAGACAAGAGCTGCTTTAATAAAGCTTAACATTTTTCccttccctttttttcttttatgtccCATTCTTCAAACAGCGTTATTATTTCTAATCATTATGATTACCTTGTGATTAACATCTCTAAAATATATGCTTCAGTATCTATCAGCTATTTTAAAAAAGGCACTTTGCATGTTTTGTCCATCTACTGTAAGGAGGAAGTGATTGGCCCTCTGGCTCATTAGAATAAAAATCAGGGGGAATTATCCATTTACTGTAGCACTGATCTGAACACAACAACTGGCTCTGAAGGGAAGTGACACACTCTGCAGTCGGTTTGGCAAACAGGCAACGCTCCACAGTAACGGATGCCAAGTACGGGGCAAACTGCATTCCCATGTTTCCTGGCAACAAGTTGTTCCTCTGTGAGAAAAGCCGTGGCGCTGAGGCAAGGCCGCAGGAAGCGTTGTCCCACAGAGCTGACAAAAAAGTCACCCCCCGTGACGGTTGAAGGACGGTTCCTGCATGATTTCAAGTTTTGCTCATTTGTTTTCACATATTTTCTATCCCTTTCAATGCTGTTACTGAAAACAACCAGACATGCTCAAATCAATCTCCCAGCACTGTGAATAAGAGGGAAGAAATAATAATGCTATTATTAAGAAGAATCTCACACCTTGAAAGaattccttctttttttatagAAATGGACCAGTAActccgccttcacactggcagttgaaatcagctccgcaATACACCCCCAGCGGACGTTGTACTACACCGTTGAAAAGCTTCGGAAGCGACTCACAAAAATGGCGGAGAGACTAGAACGAGTGATAAGTGTCTGAATGTCCGATTCTCTCGGACCTCTCTTATACAGCTATaaatagaaaggctgctgcgtggagaGAAGTTGCCCAGGACGTTGACATGTCAGGTCGGTTAAATGTGATCTAgctagcggtataatgtcaatagttcggtgtctgttgctagctaaccaattagcattagcaggtttgtttatcagtaccatagcaacgctaactTCCGTCGGATAGGAACCGTCCGTAGCCTTTCGCGAGAGTTCAATTTTTTGAACGCATCcggatgaccaactgacacgattTTTTCCGCACCGCATTCGTTCGGATCCATTCGCATGCGGTCTGCGAatctccataggaaatgaatgacttccggtcgtTTCGAAGCCGtatcggagctgatttcaactgccaatgtgaaggcggcgtaagacacagcagtgctttaaaaaggtcccatggcatgaaaatttgactttatgaggtttttttaacattaatatgcgttcccccaacctgcctatggtcccccagtggctagaaatggtgataggtgtaaaccgagccctgggtatcctgctctgcctgcgaaaaaaattaaaatgaaagctcagatgggccgatctggaatcttctccttatgaggtcataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggcccacccatgagagagagaaagacatcatggcttgcataTATTTGGTcacaaaccaaagtattggacattATGACCCgctggtggtgctagaggatcaccaaagttattacatttCATCTTGGCGGGTACATGAATGCGGGTACCAAACGCCATGGCGATCCATCCAATATTAATAGCTTcaccgctagcatggctaaacaTTGGTCTACAAGCCTAGTCTTTAAACCTAAGGCATAGCAATACAATGCTGTCACCCTTCACTTTCTCAACTTTTTCTCTACAAATGTGATGCCAATTGAGCTTCCATTGGGATCCGCTAGCATTGTGCTAACTAGCACCACCACAATCCCCAGCAGTTGTCTCTTTTCACATAAAGAAAAGCTGATGCTGAGGTTTCACCGGGCTCTACTGCCATAACAAGATGCTTCTCACTGCTAGaaagaaattgaaatgaaaGATTTTCACACGTTGCGCTTTTAAATGGATGCTATCTTTGTTAGTGGGAGCAACTCTTGAATACAAAGCCAAAAGTGAGCCAAAACCCTAAAAATCATGCTGGAACTTTCCTTCAAAATCCACAGAGTATAACAGTATGGGCGAGAACAAGTGAGCGATACCTGTTCTTACTCACTAATCTTTCTGACTACAGTGTATAGAGCTTGTCTTCAGTATTTGAAATGATGTTTGCATCAGAGCTAATTTAGCCACAAGGGTGCTGTAGAAACTATCGCTGTGAAGATGTTCAAGCAGGGATTTGTACTTAATCCTCATTCCAACAGTTGCCTTTGGGCAGTAGAAAGTCCTCTCCAGAAGCAATATGCTGTTGAACATGCAGGTATGCTGATTTAGTGCCCTAGTTAGTGAGCTGGCCTGAGAGCTATGGCTAAAGACGTCACGTGTATACGATACGAACAACCGAGGTAATGCGGTAACGCTCCTTAATTTTCCAAGCACTTGGCGTTCTTGCGGCGGCTGAGCAGACCTAAATAACTTGTGATGAGGGTTAAATTTATACTGAGAGGCTGACAGCGCAGCCTTCAGCGCCAGCGGGGCTCCACGGCCCGACCCTGTGTCCGTAAacgtctgttttttttcctccgcaACCCTGTCTCCCCGTGTCAGGCCTTCCCTGCCTTCATGTATGTGGGGATGGTGCCTCGCTGAGTCAGACCCTCAAAGCGTTTGTACGTGTAGTTGAGGAACACCCAATCCTTCGATTTGAAATCTGGCTCCGT

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311018 lncRNA upstream 713 21264396 ~ 21264699 (+) True G229263
TU310977 lncRNA upstream 44600 21220448 ~ 21220812 (+) True G229233
TU310964 lncRNA upstream 115131 21148293 ~ 21150281 (+) False LOC120553023
TU310941 lncRNA upstream 202977 21037948 ~ 21062435 (+) True G229205
TU310915 lncRNA upstream 340353 20923948 ~ 20925059 (+) True G229182
TU311091 lncRNA downstream 157192 21428303 ~ 21429238 (+) False arid2
TU311140 lncRNA downstream 232533 21503644 ~ 21613229 (+) False G229352
TU311145 lncRNA downstream 232533 21503644 ~ 21522423 (+) False G229352
TU311136 lncRNA downstream 243739 21514850 ~ 21577189 (+) False G229352
TU311134 lncRNA downstream 243752 21514863 ~ 21524716 (+) True G229352
XM_039791076.1 mRNA upstream 46186 21183886 ~ 21219226 (+) True zgc:162331
XM_039791075.1 mRNA upstream 46186 21198506 ~ 21219226 (+) False zgc:162331
XM_039791078.1 mRNA upstream 46186 21198506 ~ 21219226 (+) False zgc:162331
XM_039791072.1 mRNA upstream 115061 21148267 ~ 21150351 (+) True LOC120553023
XM_039792300.1 mRNA upstream 206330 21047937 ~ 21059082 (+) True LOC120553657
XM_039791879.1 mRNA downstream 30309 21301420 ~ 21304922 (+) True fgfr1op2
XM_039792450.1 mRNA downstream 34503 21305614 ~ 21326282 (+) True tm7sf3
XM_039791778.1 mRNA downstream 105761 21376872 ~ 21428732 (+) True arid2
XM_039791832.1 mRNA downstream 162470 21433581 ~ 21452526 (+) False scaf11
XM_039791828.1 mRNA downstream 162471 21433582 ~ 21452526 (+) True scaf11
TU310736 other upstream 874006 20382426 ~ 20391406 (+) False ucmaa
TU310663 other upstream 1092013 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 1092013 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 1279764 19982248 ~ 19985648 (+) True G228924
XR_005638132.1 other upstream 1457000 19631947 ~ 19808412 (+) False LOC120553210
unassigned_transcript_1504 other downstream 308202 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 308793 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 309141 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 309386 21580497 ~ 21580607 (+) True trnal-caa_28
unassigned_transcript_1508 other downstream 309631 21580742 ~ 21580852 (+) True trnal-caa_29

Expression Profile