RNA id: TU311121



Basic Information


Item Value
RNA id TU311121
length 324
lncRNA type sense_over
GC content 0.39
exon number 1
gene id slc38a2
representative False

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21461076 ~ 21474602 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACCCCCCCCTTGCTGGTGAATTTGTGATATTGAATTGGCTCCACTACACTGAACTTGAACTGATTCATCTCTGAATTATCCTACTGTGTTGATTCTGTGAAAACTGTTACATGTTAAAGCCACTGATACAGCGGCAGCAATCTTGTTTACTTTTTGACCCCTGAATACGAACCCAGATCAGCAACGTGTTCTTTACGCACATTAGCCATCTTTTGACTTCAGGAGCAAAGAGGGCTTTTCCCGCCAGTGTAACACTCTTGTTTCAATGAAACACTATGTATATCCTGTAAATAATGTCCAATTAAAATCAAAGATAATCTATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU311129 lncRNA downstream 7985 21450463 ~ 21453152 (-) True G229351
TU311131 lncRNA downstream 7985 21450463 ~ 21453152 (-) False G229351
TU311069 lncRNA downstream 196325 21264501 ~ 21264812 (-) True G229296
TU310999 lncRNA downstream 261878 21198468 ~ 21199259 (-) True G229248
TU310983 lncRNA downstream 398701 21019259 ~ 21062436 (-) False G229235
TU311185 lncRNA upstream 181055 21642515 ~ 21642768 (-) True G229390
TU311187 lncRNA upstream 194442 21655902 ~ 21656162 (-) True G229392
TU311216 lncRNA upstream 220100 21681560 ~ 21682539 (-) True G229413
TU311214 lncRNA upstream 220153 21681613 ~ 21682466 (-) False G229413
XR_005638095.1 lncRNA upstream 315573 21777033 ~ 21777676 (-) True LOC120553093
XM_039792072.1 mRNA downstream 96029 21335537 ~ 21365108 (-) False gas2l3
XM_039792073.1 mRNA downstream 107664 21335537 ~ 21353473 (-) True gas2l3
XM_039791881.1 mRNA downstream 159881 21295513 ~ 21301256 (-) True med21
XM_039791727.1 mRNA downstream 167901 21269874 ~ 21293236 (-) True LOC120553384
XM_039792110.1 mRNA downstream 199435 21234254 ~ 21261702 (-) False LOC120553569
XM_039792250.1 mRNA upstream 57165 21518625 ~ 21571113 (-) False slc38a4
XM_039792248.1 mRNA upstream 57165 21518625 ~ 21550067 (-) True slc38a4
XM_039791971.1 mRNA upstream 222750 21684210 ~ 21753271 (-) False LOC120553490
XM_039791970.1 mRNA upstream 222750 21684210 ~ 21753271 (-) True LOC120553490
XM_039791972.1 mRNA upstream 222750 21684210 ~ 21753269 (-) False LOC120553490
XR_005638087.1 other downstream 315604 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 502917 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 1338798 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 1621835 19811245 ~ 19839302 (-) False etv6
TU311312 other upstream 309628 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 309676 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 1643300 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 2230561 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 2238237 23699697 ~ 23700198 (-) True G229907

Expression Profile