RNA id: TU311129


Basic Information

Item Value
RNA id TU311129
length 1298
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G229351
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21450463 ~ 21453152 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTATTGTTTCAAAGGAGATTTTTTTGGGAAGTACAGAGCAGAAACAATACAGAAACGAGATGGAGACGAAATTCAAATGTAAACTCCGAGGAAGGAAACCCTTCCATCTTTAAAATCTTATAATGGAGAGGTTTCCTTCTTTCATCTGAAGcctgacaaacacacagcagaTCAGGAAGCAGCTAATTTATTTCACTACTCTCTGGATACTTTGCACAGTTCCTGTTCACCCATTGACATTGAATACACATTCAGGCAGGGGGTGGGGTTTATTTCATTTGATCTGCCTCTCTGAGACCTGTGCCTTACATTACAAACTCACTGCTGATTGGCCATCCCACTTAAGAGTCTCCTCAACCAATCAGGGCCCAGATTACAATCACACTCATCAGATTCCAGCCCTTAACTGGGCCACAGAGATTAATAAAGGCAATGCACTGTTTTTGAAACTAGGCTTTCATCtgaaatattatataataataaaaaaagaaaagaacattgACAATATTTAATTAATAAGCTATGCGATCAGGATGCCATTTAGGAGAAATTCATCGTACCAGCACCCTGGGAGAGGCTCTCCACCACATAAACTGACATCGTTCGCTGAGCGTTGCATCCCCGTGCTCCTTACAGTAGTTCCCAGGTCACATGATCTATGCAAAATAAAGGGCTCTTGCATTACAATTTCTGATTGGGCAATTCTTTTTCtaacaaaatatgaaattctatagaaaaaaaatcttcattcaataaaaggtagagatataaaaaaaaaaaataataataatgttggcTCTCCGTTGTCTTTCAGTTTGGAGGCCAAATTCCAGCCAGAGGAAATTGCACTTAAGCAGCTGAATGGGTCTGTGAGGGCGCTGCCGCGCCATCAGCAGGGCGGGGGTTCACTTCTTGCGGGCGTGCTTGTATTTGTCCACGTAGGCCTTCACCAGGTTGGCCACCTTACTGGAGTTCACCTCACCACTCTTGCTGTGACACaccTTTTCTACCGCTTTGCGGACAATCTCCTTGTACTCGTCCTTTGTGATTTCCTTCTTTTGGTAATAGGGTTTGATGGCATTCTTCACTTCGTTTACAGCTTTCTCTTGGATCTGTTgttaccttttcttttttggagcTATCAGCTTGAGCCTTATAATGCTGGCCGGGCTGAGTTGTAGAGGATGGTAGCACCTGGCTGGGTGCCGACTGGCCATGGGTCGCCACGGCAACACCAGCTTTGGTCGGGGTGGGAAGAAGGCCAGGTTTCCCATAAGCCATCATTGTACTTGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311069 lncRNA downstream 185651 21264501 ~ 21264812 (-) True G229296
TU310999 lncRNA downstream 251204 21198468 ~ 21199259 (-) True G229248
TU310982 lncRNA downstream 388027 21019259 ~ 21062436 (-) True G229235
TU310983 lncRNA downstream 388027 21019259 ~ 21062436 (-) False G229235
TU310905 lncRNA downstream 582934 20867300 ~ 20867529 (-) True G229172
TU311122 lncRNA upstream 7924 21461076 ~ 21461460 (-) False slc38a2
TU311121 lncRNA upstream 7985 21461137 ~ 21461460 (-) False slc38a2
TU311185 lncRNA upstream 189363 21642515 ~ 21642768 (-) True G229390
TU311187 lncRNA upstream 202750 21655902 ~ 21656162 (-) True G229392
TU311216 lncRNA upstream 228408 21681560 ~ 21682539 (-) True G229413
XM_039792072.1 mRNA downstream 85355 21335537 ~ 21365108 (-) False gas2l3
XM_039792073.1 mRNA downstream 96990 21335537 ~ 21353473 (-) True gas2l3
XM_039791881.1 mRNA downstream 149207 21295513 ~ 21301256 (-) True med21
XM_039791727.1 mRNA downstream 157227 21269874 ~ 21293236 (-) True LOC120553384
XM_039792113.1 mRNA downstream 188761 21234254 ~ 21261702 (-) False LOC120553569
XM_039792251.1 mRNA upstream 7985 21461137 ~ 21474602 (-) True slc38a2
XM_039792250.1 mRNA upstream 65473 21518625 ~ 21571113 (-) False slc38a4
XM_039792248.1 mRNA upstream 65473 21518625 ~ 21550067 (-) True slc38a4
XM_039791971.1 mRNA upstream 231058 21684210 ~ 21753271 (-) False LOC120553490
XM_039791970.1 mRNA upstream 231058 21684210 ~ 21753271 (-) True LOC120553490
XR_005638087.1 other downstream 304930 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 492243 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 1328124 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 1611161 19811245 ~ 19839302 (-) False etv6
TU311312 other upstream 317936 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 317984 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 1651608 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 2238869 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 2246545 23699697 ~ 23700198 (-) True G229907

Expression Profile