RNA id: TU311140


Basic Information

Item Value
RNA id TU311140
length 258
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G229352
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21503644 ~ 21613229 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagtgtgtgtgtgtgtgtgtgtgtgttgagcttgTTTTCATGTTCATACAGTGATGATAGCGTGATGTATGACTTGCACAACCCTTTTTACCTCCCGCAGTTGTCACTGCAAGCACACGTGTGTCAACATGTcggaaaaaagcaaaaaagatcCCAAACATGAAGGGCCACACACTTACAGTATCTTGACAAGCAggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311091 lncRNA upstream 74406 21428303 ~ 21429238 (+) False arid2
TU311019 lncRNA upstream 232533 21265412 ~ 21271111 (+) True G229264
TU311018 lncRNA upstream 238945 21264396 ~ 21264699 (+) True G229263
TU310977 lncRNA upstream 282832 21220448 ~ 21220812 (+) True G229233
TU310964 lncRNA upstream 353363 21148293 ~ 21150281 (+) False LOC120553023
TU311175 lncRNA downstream 6744 21619973 ~ 21620222 (+) True G229381
TU311181 lncRNA downstream 23868 21637097 ~ 21637359 (+) True G229386
TU311190 lncRNA downstream 52969 21666198 ~ 21666434 (+) True G229395
TU311191 lncRNA downstream 54484 21667713 ~ 21667988 (+) True G229396
TU311194 lncRNA downstream 69390 21682619 ~ 21683484 (+) True G229399
XM_039791832.1 mRNA upstream 51118 21433581 ~ 21452526 (+) False scaf11
XM_039791828.1 mRNA upstream 51118 21433582 ~ 21452526 (+) True scaf11
XM_039791831.1 mRNA upstream 51118 21433582 ~ 21452526 (+) False scaf11
XM_039791830.1 mRNA upstream 51118 21433582 ~ 21452526 (+) False scaf11
XM_039791778.1 mRNA upstream 74912 21376872 ~ 21428732 (+) True arid2
XM_039791040.1 mRNA downstream 11273 21624502 ~ 21630444 (+) True LOC120553001
XM_039791170.1 mRNA downstream 144424 21757653 ~ 21766517 (+) True LOC120553089
XM_039791166.1 mRNA downstream 153678 21766907 ~ 21801671 (+) False LOC120553088
XM_039791167.1 mRNA downstream 173987 21787216 ~ 21801671 (+) True LOC120553088
XM_039791169.1 mRNA downstream 174338 21787567 ~ 21801672 (+) False LOC120553088
TU310736 other upstream 1112238 20382426 ~ 20391406 (+) False ucmaa
TU310663 other upstream 1330245 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 1330245 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 1517996 19982248 ~ 19985648 (+) True G228924
XR_005638132.1 other upstream 1695232 19631947 ~ 19808412 (+) False LOC120553210
TU311226 other downstream 224693 21837922 ~ 21847020 (+) True G229423
TU311228 other downstream 235982 21849211 ~ 21850601 (+) True G229425
TU311225 other downstream 244754 21857983 ~ 21859209 (+) True G229422
TU311231 other downstream 253972 21867201 ~ 21868297 (+) True G229428
XR_005638197.1 other downstream 1126488 22739717 ~ 22743179 (+) True phlda1

Expression Profile