RNA id: TU311191


Basic Information

Item Value
RNA id TU311191
length 276
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G229396
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21667713 ~ 21667988 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttttgctcggaacaaaaatcatctttattTACAACAAGAGAAaacgttacagatgcatcgttgcatatGGTAAATATAATacagcctactttggatgtctcgtgagctaaaccggctatcactgtcactgtgtcacgagccaaagcatcaagagattgttgtagcaaccaacgtaataactcagatttatatagcgcatttcatgaaactcaaggacgctttacacagctacagggggacaagggaaaagaaaatagtaagccaacacaaacacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311190 lncRNA upstream 1279 21666198 ~ 21666434 (+) True G229395
TU311181 lncRNA upstream 30354 21637097 ~ 21637359 (+) True G229386
TU311175 lncRNA upstream 47491 21619973 ~ 21620222 (+) True G229381
TU311136 lncRNA upstream 90524 21514850 ~ 21577189 (+) False G229352
TU311134 lncRNA upstream 142997 21514863 ~ 21524716 (+) True G229352
TU311194 lncRNA downstream 14631 21682619 ~ 21683484 (+) True G229399
TU311235 lncRNA downstream 99365 21767353 ~ 21768029 (+) True G229432
TU311254 lncRNA downstream 161027 21829015 ~ 21833797 (+) True G229450
TU311253 lncRNA downstream 163614 21831602 ~ 21833797 (+) False G229450
TU311234 lncRNA downstream 185208 21853196 ~ 21866320 (+) True G229431
XM_039791040.1 mRNA upstream 37269 21624502 ~ 21630444 (+) True LOC120553001
XM_039791832.1 mRNA upstream 215187 21433581 ~ 21452526 (+) False scaf11
XM_039791170.1 mRNA downstream 89665 21757653 ~ 21766517 (+) True LOC120553089
XM_039791166.1 mRNA downstream 98919 21766907 ~ 21801671 (+) False LOC120553088
XM_039791167.1 mRNA downstream 119228 21787216 ~ 21801671 (+) True LOC120553088
XM_039791169.1 mRNA downstream 119579 21787567 ~ 21801672 (+) False LOC120553088
XM_039791168.1 mRNA downstream 121055 21789043 ~ 21801671 (+) False LOC120553088
unassigned_transcript_1526 other upstream 70835 21596768 ~ 21596878 (+) True trnal-caa_47
unassigned_transcript_1525 other upstream 71577 21596026 ~ 21596136 (+) True trnal-caa_46
unassigned_transcript_1524 other upstream 73289 21594314 ~ 21594424 (+) True trnal-caa_45
unassigned_transcript_1523 other upstream 73829 21593774 ~ 21593884 (+) True trnal-caa_44
unassigned_transcript_1522 other upstream 74175 21593428 ~ 21593538 (+) True trnal-caa_43
TU311226 other downstream 169934 21837922 ~ 21847020 (+) True G229423
TU311228 other downstream 181223 21849211 ~ 21850601 (+) True G229425
TU311225 other downstream 189995 21857983 ~ 21859209 (+) True G229422
TU311231 other downstream 199213 21867201 ~ 21868297 (+) True G229428
XR_005638197.1 other downstream 1071729 22739717 ~ 22743179 (+) True phlda1

Expression Profile