RNA id: TU311231


Basic Information

Item Value
RNA id TU311231
length 1097
RNA type TUCP
GC content 0.48
exon number 1
gene id G229428
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21867201 ~ 21868297 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACCACCAACCGCCGCCGTCTGAATTGGCACATTTCGTTTCAGCGATGTCACCAAAGATGCACGGGGAGCAGCCGTCATTGTCGCGATCGGTGGTGCTGAAGCCATAGCCATTCTGGTCGATGCCCTAATAGGCACCACGGATGGCATCACCTTTGGATAAAATTGGAAACATTTTTAAGGAAGTTTAGAAtgtaaacttagcacaaaaagtaaggaaatttgtgtttggtagattatttatctgtggtaacaatgctttttggcaatacatGTTATAccattggaaagcctgtttagttccctttcaaatggtgccccatttgtaaggaacatgcatttgtgggatgagcagcagcgctgagtatgtgggttgcgcccatgaaatatttgccaaatcttctctgccattgccaaacagcttattctgccattgacttgtttggtggattggatgattctgCCTACGGCACTTGGATCAAAGGGTCAAAGTGGGGAGAAGATGCGGAGAACGCTATGCTGATTGCTGCACTGTTAGAGTAACACCTTTTGGTGGAggcagtgtgatggtgtggggcagcatctccctcactggaaaaacgaggcttgtcatcattggaggcaatctcaatgcagagagatatagagatgagattctgcaaccagtggcaatcccatatctccacagtctgggactgaactctatcctccaagatgacaacgctcgcccccacaggccggggtttatcagagaccTTCGGAATgtggagtggagaggatggaatggcctcccagcagtcctgacctcaaccccattgaacacttgtgggatcagcttgggcgtgctgttcgtgccagagtgaccaacacaaccacgttggctgacttgcaacaaatgctggttgaagaatgggatgccatcctaCAGCAGTGTGTGTCCAGGCTGTTGAccaccagcatgaggaggaagggccaggctgttgtggctgtgtatggttcttccacacgctactgaggctcatgtttgtgaaatgaataaattgttaaattgccaatatgtcttgtttcttcaaacatCATCCAAATGACAAATGGGTT

Function

GO:

id name namespace
GO:0005507 copper ion binding molecular_function

KEGG:

id description
ko00410 beta-Alanine metabolism
ko00770 Pantothenate and CoA biosynthesis
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311234 lncRNA upstream 881 21853196 ~ 21866320 (+) True G229431
TU311254 lncRNA upstream 33404 21829015 ~ 21833797 (+) True G229450
TU311253 lncRNA upstream 33404 21831602 ~ 21833797 (+) False G229450
TU311235 lncRNA upstream 99172 21767353 ~ 21768029 (+) True G229432
TU311194 lncRNA upstream 183717 21682619 ~ 21683484 (+) True G229399
TU311290 lncRNA downstream 183711 22052008 ~ 22098446 (+) True G229481
TU311294 lncRNA downstream 260729 22129026 ~ 22131396 (+) True G229485
TU311300 lncRNA downstream 425200 22293497 ~ 22293760 (+) True G229491
TU311302 lncRNA downstream 451969 22320266 ~ 22320528 (+) True G229493
TU311303 lncRNA downstream 457498 22325795 ~ 22326257 (+) True G229494
XM_039791169.1 mRNA upstream 65529 21787567 ~ 21801672 (+) False LOC120553088
XM_039791166.1 mRNA upstream 65530 21766907 ~ 21801671 (+) False LOC120553088
XM_039791167.1 mRNA upstream 65530 21787216 ~ 21801671 (+) True LOC120553088
XM_039791168.1 mRNA upstream 65530 21789043 ~ 21801671 (+) False LOC120553088
XM_039791170.1 mRNA upstream 100684 21757653 ~ 21766517 (+) True LOC120553089
XM_039791174.1 mRNA downstream 2286 21870583 ~ 21877270 (+) True LOC120553094
XM_039791175.1 mRNA downstream 2286 21870583 ~ 21877270 (+) False LOC120553094
XM_039791176.1 mRNA downstream 2405 21870702 ~ 21877270 (+) False LOC120553094
XM_039792517.1 mRNA downstream 9981 21878278 ~ 21890573 (+) True LOC120553802
XM_039792519.1 mRNA downstream 26643 21894940 ~ 21928410 (+) True LOC120553804
TU311225 other upstream 7992 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 16600 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 20181 21837922 ~ 21847020 (+) True G229423
unassigned_transcript_1526 other upstream 270323 21596768 ~ 21596878 (+) True trnal-caa_47
unassigned_transcript_1525 other upstream 271065 21596026 ~ 21596136 (+) True trnal-caa_46
XR_005638197.1 other downstream 871420 22739717 ~ 22743179 (+) True phlda1
XR_005638156.1 other downstream 1447126 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other downstream 1447126 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other downstream 1447126 23315423 ~ 23438184 (+) False kcnc2
TU311873 other downstream 1964734 23833031 ~ 23848624 (+) True adm2a

Expression Profile