RNA id: TU311254


Basic Information

Item Value
RNA id TU311254
length 2197
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G229450
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21829015 ~ 21833797 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagtccaaaaattttaatttatttatttgaacagggacagtgcacaaaaaCATTGATAGATGTCGTGCCAGGTTGTAGCAAATTGTTAGTTTCCGCCCGTAGTCCCTGGCAGGAAACAAACAAACTCCAAACATTAACGAAGGtaagcagttaaaaaaaaataatagggAATACCCAGGGAAAGGGAAAAACCAGGGACACTGAAAACACGGACTCAACTTATTTTAATAGTTTATAGTAAGAAACTGACGTTTCAGGGCCTTTTAAGATACTGAGCTAATGCCTAGTATGTATAGGTTTATAACCGACATCTCAACTTATGAACACACTTTTATTTCAAACtttgaaacaaacaaaataataatcattCAAATATATCAGTGTGTTTCTGGTGTTTCAGACCCAGACAGGTCACCGAGTGACTGGTCATCTGAGCCGTCATACTTCATCAGCAAATTCGTTGATTACATGTAGGGGTGACCATTCGGTCAAATTTGGTCAAATCCAGGGCTATGTTTTACTCTTCAACCACTTTAAACACTGCAATAAAAGCATCATGATCACACAGACATGGACATGACCATACTGATGAACACGGGAACACACTGGGTTACATAACATCTTTTTTTCAGGCAGCAGGAAGGAAAGTCTGAGGTGGAAGTAGAGAGTAGCAACAGGAGCAGCAGTAACAGTACTGACAACCCACATTGTGTTTACTCTGAAAACTGAGGCTTAGGTGGTCCACCTGTTGGAACAAACCTCTCTCCCTGACCTGTCTGAAAGGCTCTACGATGATCAGGTGATGCAAATCGTTTGTGCCCAGGCGGGAGGTTTCCTGTCATAGGCAAGTATCCTCTTGTTCTGCTCCTTTTCAGCACATGCATTAGGTCCATCCAAAGGCTCCGCAAATGCATCAGAATATGGATTCTCCAGAACTTTGAGGAGCGTGTTGACCTCAGAGAAGTCTCCATTTTCTGCAGCCTGAATTGCATTCTGGGCGATGTAGTTGCGTAGGACAACACTGGGGTTGGTGCTGTTCATCACACTGAGCCGCTCCTTTTTTATTAGTGACAGGTCCCCTGTGCCATCACACTCCCTGGGTAAACGCCTCCTGTATTGGCTAACCCAGCGAATCCAGTCATCGCGCTGCTTTTTCTTAAGCTCAACCTGATCTGTCTCGAGCAGCTCCTTTAGCCGTCCCATCAGTTCCAGTTGCTGGGACACAGCTGGCCTGTCGGCCACCATCCCAAACATGACTGGGTTAGTTTGTGCCATGGACAGAATCATCGCCAATTCACTTTAACTTACATATTGTCTTGGTAAGCTTTTTCCCCAAAATGCTAGCATATAGAAGGAAAAACAAATTAGAGGACAAGAGAGATTTAGACATTTTAACCAGTGCTTTGCTCAGCTAGCATTACATGCACATTTGTTGGGAGCATATGGTGGGGCAGCTAGATACTTTAAATTCCTGCTATACAGCAGCTGCTCTGTGAAGAAACACGTGTATCCAACCACCATACACTCCCTCACCGGTTCTCCATAGTTGGCTTATTAGCCACCTTTAGCTCCTCAATAGATGCACACTGCTCTAGGATGAGGTCTACTACTGGCTCCACTGTGGCCCTCCCACCGTGGCCCTCGTCAGGCCAGGGGACACGGCTCAGCAGGCGGAAGGTGTTGGTGAAATCTGCACCTGGAAACACATTTTGTTATAGTCCCATGCCCAGACTGTAAAAGCATAACTGTCACATTTTCATAGATTTCTATTTTCAGAGATGTCTAACACATAACCGAAACGTCAGCGGTACCATTAATGAGATATTTGATGAACATTAAAGTATTTAAACATGTTGTAGCAGAAACCCCAAATAGAGGTATGAGcgtaatatgggacctttaagttgtCTGTCTTTGTACCAGTGTTGTGCATAAGGTGCAGTAGGTCTGATATGAGTTCGCTGTCCTCCGGCTCTTCTTTTCCCACAAGGCCTAGCTTTTTCCTCATGATACACAGGTAGAAGACTTCGTATGTGGGCATGAATTGATCCAGGATAGCCCCGGCCTCGGCTGCATCCAGTTCAGAGCCCAACGCCTCGGCCAGACGGGCCAGGTTCCAGCGGCACATAGATGGCTGGGCTTGGTACGAGTAGCGCCCTCTTTTGTCTGAGTTGTTGCAGACGAAATCTGGATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311235 lncRNA upstream 60986 21767353 ~ 21768029 (+) True G229432
TU311194 lncRNA upstream 145531 21682619 ~ 21683484 (+) True G229399
TU311191 lncRNA upstream 161027 21667713 ~ 21667988 (+) True G229396
TU311190 lncRNA upstream 162581 21666198 ~ 21666434 (+) True G229395
TU311181 lncRNA upstream 191656 21637097 ~ 21637359 (+) True G229386
TU311234 lncRNA downstream 19399 21853196 ~ 21866320 (+) True G229431
TU311290 lncRNA downstream 218211 22052008 ~ 22098446 (+) True G229481
TU311294 lncRNA downstream 295229 22129026 ~ 22131396 (+) True G229485
TU311300 lncRNA downstream 459700 22293497 ~ 22293760 (+) True G229491
TU311302 lncRNA downstream 486469 22320266 ~ 22320528 (+) True G229493
XM_039791169.1 mRNA upstream 27343 21787567 ~ 21801672 (+) False LOC120553088
XM_039791166.1 mRNA upstream 27344 21766907 ~ 21801671 (+) False LOC120553088
XM_039791167.1 mRNA upstream 27344 21787216 ~ 21801671 (+) True LOC120553088
XM_039791168.1 mRNA upstream 27344 21789043 ~ 21801671 (+) False LOC120553088
XM_039791170.1 mRNA upstream 62498 21757653 ~ 21766517 (+) True LOC120553089
XM_039791174.1 mRNA downstream 36786 21870583 ~ 21877270 (+) True LOC120553094
XM_039791175.1 mRNA downstream 36786 21870583 ~ 21877270 (+) False LOC120553094
XM_039791176.1 mRNA downstream 36905 21870702 ~ 21877270 (+) False LOC120553094
XM_039792517.1 mRNA downstream 44481 21878278 ~ 21890573 (+) True LOC120553802
XM_039792519.1 mRNA downstream 61143 21894940 ~ 21928410 (+) True LOC120553804
unassigned_transcript_1526 other upstream 232137 21596768 ~ 21596878 (+) True trnal-caa_47
unassigned_transcript_1525 other upstream 232879 21596026 ~ 21596136 (+) True trnal-caa_46
unassigned_transcript_1524 other upstream 234591 21594314 ~ 21594424 (+) True trnal-caa_45
unassigned_transcript_1523 other upstream 235131 21593774 ~ 21593884 (+) True trnal-caa_44
unassigned_transcript_1522 other upstream 235477 21593428 ~ 21593538 (+) True trnal-caa_43
TU311226 other downstream 4125 21837922 ~ 21847020 (+) True G229423
TU311228 other downstream 15414 21849211 ~ 21850601 (+) True G229425
TU311225 other downstream 24186 21857983 ~ 21859209 (+) True G229422
TU311231 other downstream 33404 21867201 ~ 21868297 (+) True G229428
XR_005638197.1 other downstream 905920 22739717 ~ 22743179 (+) True phlda1

Expression Profile