RNA id: TU311302


Basic Information

Item Value
RNA id TU311302
length 263
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G229493
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 22320266 ~ 22320528 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagctattctgttcttaggctactgtatactgtatgtgactatcagattgtagccatatttctgctagatatttttttaattaaactttaatattaatttatacaattgcaatgccttgattttagtaaagttagtacacagtcatagccataaatgcaatggtactaataattggcttaatttctttcggtgtttcggtcttggtttcctcttttttcggttttcggtttcggccaagaattttcatttcggtgcatcacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311300 lncRNA upstream 26506 22293497 ~ 22293760 (+) True G229491
TU311294 lncRNA upstream 188870 22129026 ~ 22131396 (+) True G229485
TU311290 lncRNA upstream 221820 22052008 ~ 22098446 (+) True G229481
TU311234 lncRNA upstream 453946 21853196 ~ 21866320 (+) True G229431
TU311254 lncRNA upstream 486469 21829015 ~ 21833797 (+) True G229450
TU311303 lncRNA downstream 5267 22325795 ~ 22326257 (+) True G229494
TU311420 lncRNA downstream 33587 22354115 ~ 22354388 (+) True G229559
XR_005638125.1 lncRNA downstream 445573 22766101 ~ 22771633 (+) True LOC120553177
TU311500 lncRNA downstream 512422 22832950 ~ 22833161 (+) True G229621
XR_005638089.1 lncRNA downstream 655945 22976473 ~ 22994911 (+) True LOC120553039
XM_039792519.1 mRNA upstream 391856 21894940 ~ 21928410 (+) True LOC120553804
XM_039792517.1 mRNA upstream 429693 21878278 ~ 21890573 (+) True LOC120553802
XM_039791174.1 mRNA upstream 442996 21870583 ~ 21877270 (+) True LOC120553094
XM_039791197.1 mRNA downstream 172850 22493378 ~ 22506203 (+) True e2f7
XM_039791287.1 mRNA downstream 194438 22514966 ~ 22534115 (+) True csrp2
XM_039792120.1 mRNA downstream 254295 22574823 ~ 22675194 (+) False osbpl8
XM_039792119.1 mRNA downstream 254295 22574823 ~ 22675194 (+) False osbpl8
XM_039792125.1 mRNA downstream 254295 22574823 ~ 22675194 (+) False osbpl8
TU311231 other upstream 451969 21867201 ~ 21868297 (+) True G229428
TU311225 other upstream 461057 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 469665 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 473246 21837922 ~ 21847020 (+) True G229423
unassigned_transcript_1526 other upstream 723388 21596768 ~ 21596878 (+) True trnal-caa_47
XR_005638197.1 other downstream 419189 22739717 ~ 22743179 (+) True phlda1
XR_005638156.1 other downstream 994895 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other downstream 994895 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other downstream 994895 23315423 ~ 23438184 (+) False kcnc2
TU311873 other downstream 1512503 23833031 ~ 23848624 (+) True adm2a

Expression Profile