RNA id: XR_005638156.1


Basic Information

Item Value
RNA id XR_005638156.1
length 4701
RNA type transcript
GC content 0.49
exon number 5
gene id kcnc2
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23315421 ~ 23440663 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCATCGGAGCAACTGGAAATACGTGTGCTAAGTGACTTCTCCCAGGGAGTGATGAGTAAGAAGACGACGTTactctttttaaataaatctgtgCTTTTACgttacatatttttttagtAACGACCCTGACGCTGACGAGCGGTTGTGCGTCTTGGAGAGGGCAGGGACGCCGGAGACGCGCAACGGCAGCAGCGCAGTCTGGTTGGAGCCACCGGTTGAGATCATTCAACTCAACACAACTCTGAGCACTGACTGTCTCATCGAATTGTGGGATACATATCGACGACCTCCATTTACCCGAAATCTTACTAAACACACGATGGCCATCCTCCCCGACCCCCTGAATAGCCACAAAAGCGTCGGATGAGTGAAATCGGAGATGCTGCGCACCACGGCCAAAATCCTGGAGTTTTTTTGAACGGGACTGTGGGTGTGTGCGCGTCGGGCTCGCCGTTACCTCCGGACTGCACTCGCCAACTTTCCCCGCTCTCCATCAAGTCATGTCTGATACAGAGCGATGGGCAAGTTTGACGACAACGAGAGGATAATCCTCAACGTCGGAGGCACCAGGCACGAAACCTACAAAACCACCCTGAAGACCCTGCCGGGGACGCGACTGGCCCTGCTCGCCTCCGACTCGGACATAGACTCCGTGCTGGATCAGCTGCAACAAGTCCCCGGCTTCATCGAGTACAACGCGCGGACGAACGAGTACTTCTTCGACCGCCACCCGGGTGTCTTCGCCTACGTGCTCAACTACTACCGCACCGGGAAACTCCACTGCCCGGCGGATGTGTGCGGACCGCTGTTCGAGGAGGAGCTCTCCTTCTGGGGAATCGATGAGACGGACGTGGAGCCCTGCTGCTGGATGACTTACCGGCAGCACCGGGACGCGGAGGAGGCTCTGGACGTGTTCGAGCTCAACGTGGACAACGGGGAGGATGACGACGAGATAGGGAAGAGGCTCGGCATTGAGGATGTGGCTGCCGACGGTAATGTCAGCCTGTGGAGGAAGTGGCAGCCGGTGATCTGGAATCTATTCGAGGATCCCTACTCCTCCAGGGCAGCGAGGTTTATAGCCTTTGCATCGTTGTTCTTCATCCTGGTCTCCATCACCACCTTCTGCTTGGAGACTCATGAGGCTTTCAACACCATCATCAACAAGACCGGGCTGAACAGTAGCGTGCCTGACTCAGGCCCGCAGTACGAGATTGAAACTGACCCTGCGCTCACCTATGTGGAGGGCGTTTGCGTCTTCTGGTTCACCATTGAGTTCCTGGTGCGTGTGACCTTCTGCCCGGTGAAGTTGGAGTTTGTCAAGAGCGTTCTCAACATCATTGACTTTGTGGCCATCCTGCCTTTCTACTTGGAGGTAGGGCTGAGTGGCCTTTCTTCAAAGGCTGCCAAGGATGTGTTGGGTTTCCTCAGGGTGGTGCGCTTTGTTCGTATCCTGCGTATCTTCAAGTTAACGCGTCATTTTGTGGGACTAAGGGTGCTGGGCCACACATTACGGGCCAGCACTAATGAATTCCTGCTGCTCATCATCTTCCTGGCATTGGGAGTGTTAATTTTTGCCACCATGATCTACTACGCCGAACGAATCGGCGCTATGCCTAATGACCCCACTGGTAGCATCCACACCGATTTCAAGAACATCCCCATTGGCTTCTGGTGGGCCGTggtaaccatgacaacactgGGCTATGGCGACATGTATCCAAAGACTTGGTCAGGCATGGTTGTGGGCGCATTGTGCGCCTTGGCAGGCGTGCTGACGATAGCTATGCCTGTCCCCGTCATCGTCAATAACTTTGGGATGTACTACTCCCTCGCCATGGCCAAGCAGAAGCTGCccaagaagaggaagaaacacATCCCTCAGGCGGTGCTGGGTGGGTCCCCCATCTACTGCAAGGTCGATCTCAACACCACCTGCAACAGCACTCAAGGTGACCTGTGCCATGTCAAAGGAAGTAGGGTACTAGAACGCAACCGCTCAGTTCTGTCAGCAGACTGCAGCGGGGGCAGTGACCTGACCATGTCTTCAGAGGAGAGGGTCCCCATGCGAAGGTCCAGTACCCGGGAACAGGACGGCCGCAGCGGGGGCACATGCTTCCTGCTCGCTGCTAGTGACTACACCTGCCCTGCAGACGGAGGGATGCGGAAAACGGGCTATGAGAAATCCCGGAGCTTAAACAACATAGCGGGCATGGCTGGTAACGCCCTGAGGTTGTCTCCTGCCACCTCGCCCTACGGATCGCCCTGCCCGCTGCGGCGCTCTCGCTCCCCTATCCCCTCCATCCTGTGAGACGTCCAGCCCCGGGCCATTTTGGCCTAAAGCATCCCAAAACAAACCACACTCCCTTTGGTATTAAATCTGAACTCTGTTCTAGATGTTGTGACTAGTGGATGAGTACTTAACTTTGTAGCTAAGACTAATGTGTGAGGCTTAGGCATCCTGAGCAACTCCTCACTTTCCCCTTTTCCCTTGAAGATAGATGCGCTAAGCTAACATCCTGAAGTCAGTTATCCTGTGTCACTTGGGGTTCGATATTGTCGTACTTTGAGACTTGCAATAAAAGAACTCCGACCGCTGGCTTCAGAAGTAGCAGCCATATACTTTAATAAAAGGACACATGAATAATCAGGGATATTAGATGTTGCTATATTTAGGTACCTTGAAAAAGATGTGCttccaaaaaagaaagaaagcaagatGTCACTTCATTTTAACCTCATACACAACTGTGACTTTGTCTTTGGTTTgctactttgttttttttggggatgGAGACGGGAGGATTTGTCTTTCAGGACGATGTTTTCGACTCACAAGCACACGTTACAGTCCGTCACTCTTCACCTGCTGCTGGGCCTGCTCATGCTTTTGCATGGATCATCCTGTAACCATCATCTGCAAGCAATGTGGCACGGGGAGAAGGGACCAGACAATGATTCTTTTCCTATTTGAATGACGGTGGGATAAGTCGTCAGTATGAGGACCTATTGCAGTGGGAGGAGCCTATTTGGAGCCACAAGGCCACTCCTGCAGGACAATATGGACCAGAGGGCACGCAGAAACTATTGACAGACCGCCGTCCAGCCAATGGCTCCGTGCGCGCCAGGAAGGAACTTACAGAACAAAAGGAAATCCTGGGAGGACTTTGAGAAGCATTCACCTTTTCCTGATTTCTCTTTTTGCTTTTCCCGTTGTGGAATTGTGGAAGTGAAAAAAGCAAACTGGACACGTCCTTAAAAGAGACTATCGACTGTATAGATATTGCTCctgtaaaaaagacaacaacaacagcacatCTGGGCCAACCGGTTCCGTCCACACGTCTGTCTTTTGATGGCGAGTCAGGTAACGAGGTGGTTGGTTGCTAAGTTGCACCGTGACACTCGACGTCAATCACTTTTCTTGCTGTGGTATCCCTCCTCGCAATAAGTGTATTAAGATGTATCAGTTTGAGGCACTTTGTGTTCTAAAAATGGAGTGTATTCATATATGAAattctacatacagtatatacagtatagagaGGCAAACGTGCTAAGTCGAATAAGTGTGACATTATGGTCATCTCTGCTTTTTGTTTCCCTTGGTAATTTTCAGtaggctgctgtgtgtgtgtgtgtgtgtatcctaaAACGCCAGGGTAAGATCTGCAGTTAGAAAGGCCAGGTCAGCGGAGACCAATGAGTGGACTTGATGCGTCACTCTTCCAGTTTTAGCACAAACGTGAATGAGACAGAGTTCCCCTGTGATGCAGTTCGCCGTTGTAGAAGTCCCCCGCTGAGCATTGAACATGCAACTAACCCTGAGTTTGTGCTGCAGATGTTTGTCTCTTCGCAAACCAAATTATTCCTCATTACTCCTGGTGGCTAAACAACACAAACTGCAAAACTTGATTCTTCCAAACTTTTCCCCTTGTGTGGGGTGGAGCAAAAGTGTAGCAGAAGTTTACCAAGTTTATAGAGTGGGACTTCTAGAATGGCTACATCTGCACAGTAGCAATCCTATGTAccccaaccaaccaatcagatcgGATTTGCAATAAGcacccgaaaaaaaaaaaagaagcgcCGATCCACACTGTGATTTCAGCAGCCCGTTAACACAAGAAGGCAAAAGGAAAGCGGCGTGCAAATGCAGCTCTGAAAGCTGATAGAAAGGACACGCAACTCTTGTGTCATGTTAGTTGCGACCTGCACAGTTGTTGGCTAGCCGTCAAGTGTCACCCTGTACCCACAATCCTCCTCGTGTAGTACACATGCTGCTTTACTTGTTGAATTGACAAAGGGGTACTGTTCTTTATGTATTTTTAGGATGACGTATctttgagagagaaaaaaaaaaagaggtgtttatttttttgaatccagaacatgtatttttgtgtcttaCCTGTAAAAGTCATGGTAGTCTGATGCTGTGCTTCTCCATTGTGTCCTCAAACTGTCAGGCTTTCAATCCGAGTTCATGTTTCGTATGTTTTACTGTGAGGAGAATTCTAGTTTGAAGTCTGTATTTGTGGAGCCTTTTGTTGGCATTCTAAAGTGCATGCTGAAAAAAACCATTATgtcaaattgtaaaaaaaataaaaaaaataaaaaaatactgacatactgtatatcacgTTCAAACGATGTGTATAGAGTAAAGATAAATGCTATGTGAGAGATTCACATAAACTGTT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638073.1 lncRNA upstream 57562 23232498 ~ 23257861 (+) True LOC120552982
TU311580 lncRNA upstream 107223 23207076 ~ 23208200 (+) True G229676
TU311565 lncRNA upstream 127651 23149910 ~ 23187772 (+) True G229668
TU311555 lncRNA upstream 128868 23104180 ~ 23186555 (+) True G229659
TU311576 lncRNA upstream 136471 23177956 ~ 23178952 (+) True G229672
TU311754 lncRNA downstream 139058 23579721 ~ 23585499 (+) False G229821
TU311755 lncRNA downstream 139058 23579721 ~ 23585499 (+) True G229821
TU311778 lncRNA downstream 227040 23667703 ~ 23679308 (+) True G229841
TU311911 lncRNA downstream 475148 23915811 ~ 23916388 (+) True G229938
TU311915 lncRNA downstream 503395 23944058 ~ 23945640 (+) False LOC120553686
XM_039791645.1 mRNA upstream 16105 23289578 ~ 23299318 (+) False ccdc107
XM_039791644.1 mRNA upstream 16106 23289579 ~ 23299317 (+) True ccdc107
XM_039791992.1 mRNA upstream 108945 23192726 ~ 23206478 (+) True krr1
XM_039792453.1 mRNA upstream 266829 23021415 ~ 23048594 (+) True LOC120553757
XM_039791092.1 mRNA upstream 348458 22956704 ~ 22966965 (+) True LOC120553035
XM_039791655.1 mRNA downstream 91595 23532258 ~ 23562219 (+) True pmpcb
XM_039791656.1 mRNA downstream 148312 23588975 ~ 23594379 (+) True psmc2
XM_039791272.1 mRNA downstream 190272 23630935 ~ 23651180 (+) True LOC120553165
XM_039791274.1 mRNA downstream 213812 23654475 ~ 23676478 (+) True LOC120553166
XM_039791275.1 mRNA downstream 215698 23656361 ~ 23676478 (+) False LOC120553166
XR_005638197.1 other upstream 572244 22739717 ~ 22743179 (+) True phlda1
TU311231 other upstream 1447126 21867201 ~ 21868297 (+) True G229428
TU311225 other upstream 1456214 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 1464822 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 1468403 21837922 ~ 21847020 (+) True G229423
TU311873 other downstream 392368 23833031 ~ 23848624 (+) True adm2a
TU311874 other downstream 392368 23833031 ~ 23848624 (+) False adm2a
TU311875 other downstream 392368 23833031 ~ 23848624 (+) False adm2a
TU311876 other downstream 392368 23833031 ~ 23848624 (+) False adm2a
unassigned_transcript_1527 other downstream 446674 23887337 ~ 23887424 (+) True trnay-gua_62

Expression Profile