RNA id: TU311697


Basic Information

Item Value
RNA id TU311697
length 4263
lncRNA type sense_over
GC content 0.40
exon number 2
gene id glipr1a
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23203768 ~ 23210497 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATATATACAATGAAAAACTCAAACATAATAACAATACAACACTGTAttgaaggaagaaaaaaaaactggacaAATAACACAAGAAAGAAGTGAGATTTTATTAAATTCTTTGGATAAACCAActctttaaaatgtttacagctgCTTGATATTCTTTACCTCTGTTCATTCAGACATGGGATGAGGGCTTGGCCATTACTGCAAGAGCATGGGCAAGGCACTGTGTGTCTGAACACAACACCTACCTCAAAGATGTCCGCCGTGTGCACCCTACCTTCTCCTCTGTTGGAGAAAACATATGGACAGGCTACCCACCATCAACTTTTCATGTGCAGACGGCCATAAAAAGTTGGGTGAACGAAAAACAAGTCCATGACTACAACAGAAATGTCTGCAGAGGCATCTGTGGCCACTACACACAGGTATGTGCACTTTTCTTTGGAAATATactgatgacattttttttctaaatattaaaatatttaaaataaatcaggGGAAATAAAGAGGAACTGCTCATGTTTTTTATTCTGTCTGCATTGCGCAATTTAACCCTTTTATTGTCCCCAGGTTGTGTGGGCAAGCACCTACAAGGTTGGTTGTGCTGCCCAGCTGTGCCCAAATGGTGTCAAAGACTTTGTTTCTGAAGAGGGTGTCATTTTTGTATGCAACTATGCCACAGCGGGTAATGTGAACGGAAGGCGACCGTATGAACAAGGGACAAGCTGCTCTGGGTGTAAAGGGAACTGTGAGGAGAAGCTCTGTCGTGAGTATTCAATCCTTTTTAGGTGGTACAAAAAATTCTTCATGTCCTGATTTTGAATTATGTTTAACAGATCAACACTTTTGGCTACCTTTGCCtattttcacacatacacattttatttcttggCTTTTTGTGACATCTGAGATTGTCACAGTTCATTTTAAGACCTGTTTATAACTACAAACTTAAGGAagccaagacaaaaaaaatcaagagcTTCATCATGCTATAAGCTTTGCTACTGACAGAATTTAACAAGCCACTTTACAAAAACCTATGAAATCAATGAAAATATTGGGCAAAATGTATGTGCTCAAGCATAGTAGGCATTTCAACCATTTCTGTCTTAATGTCTTTGCAGGTAGCCAAGAACGAGATTCACAGAAAAGTAAGTGACAGTACAGTATATAAGCCAACAAATAAAGTTTAAAGCACAGATACAATCCAACTTTGCTTAAAAAGGTAGTTGTGGTTCGAACGTGGTGTTAGTGAAGAAGTGCGTAACACATTCCACATGATCAATCAGTTTAAGCTGTGCTAGGTATAAATACTGAAAGCACTCTGTTTGACTTCATGTTTTCAGGTTACAACTGGACCCCAGACTGGGACCCTGCTCTGGCCACCAGTGGCTCCAACTATGCAACTATTCTGATTGTCCGGTCCACTGGCCTCATCTTCACCTTCATCACAGCATATGCAGTCCACCACTTTTATCCCGATGTCTTCTGCTATGAATAGACCACCTGTAGTGACCTTAAGAACACAAACTTACTCAGGAAGTGCTACGATGAAGATGCAggttttatttaacatttaatttttGTCAATAGGCAGCTTTTCTCTTGTCACTTACTGGAAGATCTGCACATAAAGGTCAGAGGTCTAATCGAGTTAGCAACTAGGTGAGCAAAAAGAGAGATATTTCCAGCCAACagaagagtgaatattggactctGTGTATACAAACTAGACAAGTAAATAGACAGCTGTTCGCTAACATGTTCACCATATCAACTTTATGAGGCAATAACATGTCCTTGATAAACTGcaagaagttaaaaaaataaaccaattgATTCTCCGAGAATGGCACTCagagcgcagacctccgccaaggcatgCCCCACCTCACAATGCATTGTGAATTTCTCCAGTCGGGAACTCATTATgccgacaccacatgaatgcagcacctATTTCGTGAGGTTAATTAAAGTGAAACATATTTTGTGTTCCCACTCCGTGATTTGTATCCACTCCAAAATATAATGGGTCTTACTTGCCCATAATACACCCTTCCACTGAGTTTGGTGAAAATCGGGTCAGTAGTGCTTTCACAATCGTGTTGACAGACAAACTGACATACCCaaccgaaaacataacctcTTTGGAGGTAAAAAAATAGAATGATATCCAACACTGACCTTTATTTTTACTTCCAAATAAGTGCTTTAGATAAATTGGACTTTAAATCTCACCACCAAGAAATGTGGACTTTGCTATAAACCTGTATCTAGAGATATTGTTAAGTCAAGCCACCCATACTTCACCTCTATATTAAGTTTGTTTTCATGATCAAAAAGAATTAAGGCAAACCTACAGATGTAAGATCCAGGTTGTAAAAATCTTCCTTTAATTTGACATTTCCATCAGAGTGGGTCGGCCTCCTCCTGGACACGCATTAGCCTTAAGGACAGAACAATATCTTTTGAAATGTATAAATACTGAGCATACCGACTGAGAATTGGTCTCCAGAAAGAAGATTAAACTAGGTATTATGAACAGGAAatctccacaaaaaaaaagttcaataaaAACATGAGTTTGTGATGGAATTCATTTTTGATCCAAGCACACACTGTATGTCTGGCGTCCCATCTTCCTGACAGAGTCCTTAATCTGTCCAATAGGACTGTCCAACAAATACCATATCATGGAGTACACATTACAACTATGACAGTCTAAGTCTGTGGTTagcctttgttttttgttttgctctttttctttttgccagTGGTGCTGCTGGTGGGGGGACATGGGTTCACTGGTGGAGCCCCCAGTTTCTTGGTTTTGGCTTTTTTCACTTTCTCCTTGATGGCTTCGATGTCCAGCTTGCCTTCTGTAGGAGCTGTGACAGAAATAAGGTCAACAAGGGCGGGACAGAGGTTAGCTGGACTTTTACAGTGAACAGGTTTAGACACATTTGCTTTGTTCTCAGGTaaaattgtttcccttatttcTACCTTTTGGGGTTTTCTTCATTAAAGGCTTTTCTTTAGGAGGAATGAAAGCTTTGTTCCGCTCTTCCTGCTTCTTGGTCAGTGCCTCCGCTTGTTTCACCTGAGAAAGAGGAACAATGAGTCATAATTGTCGGTTCTTAGAATATGATGCAACTTAACTATTTTAGGGTGAGCTTCTGCAGAATTTTACAGAGACTCTCATGCTAATCTAGCTGTAACTAAGCAATAGAAGGACAGATGCTTTTAAATCAACTGGACTTTATTACAGTAATATCACTCATGTGAACAGGCACAGCAGCCCAGCAGGAGATGAATCCACTCAGTACTCACTTTGATCTCTTccatcttctttctctttttaacaCTTTCACGCAGGAAGAATGCTCCTGTGGCCAGCTCCTTGTCAACCTACAAAGATAATCCACAgagaatcaaaataaaatacatctcaGTCTAAAGAAGTCTCAATGTGCATATTAGTCTCAATAACAGGGTTCAAACAAAGGAGAAACAATCCTGTTTCTGTTGTTAGTTTACATTAACTTAATTTATCAGAAAGACCTTTAAAATAGCTGCCTTTAGCGTAGTTTTATTATAATTAGGGTGGGTACCAaaacccggtgctaatatggcaccggtgcctaaaCAACTGGTATCTATGGGACTAAATAGCAACGCCGATATTAAATGCCTTCTGCGTTTCTCTCTGGTGCTCTAAAACGGACGTTAGaagcaacagaagcatcgctgaatgtggcgctagttaacactacacttggcagcaggtaatgttagcctaccgttaccgctagtaactggattaaacacggttaaaatgctgatagcttaacggtgtaaaagtgtgactgcgtttcactggagaggattccaacaccgggacgttaagcagtgtgcagctgctggaaaaacaacacagacgttgTGTTTACTTGAAACTACTAAGCCTcctggtgcattcaaagttattggaAAACACCCTATTCCTGTCCAGtggatgtttttgttattttaacagcaatttagcTGTCCCTGagttgttataagttattattaaatgtttaataaatcACTTGGACCAGATggtagcaataaacaagccgttcttaaATGTCGCCGATAGTCATTTTGtgatcttcctttttttctttaaataagtaccggttcaggcactggCATCCCTTTAAAAGTAtggttttagcaccggtatcagaaaaacccaaacgatacccaacc

Function

GO: NA

KEGG:

id description
ko04670 Leukocyte transendothelial migration
ko04380 Osteoclast differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311672 lncRNA downstream 83339 23046595 ~ 23120429 (-) True G229748
XR_005638088.1 lncRNA downstream 118174 23084579 ~ 23085594 (-) True LOC120553038
TU311505 lncRNA downstream 343357 22860118 ~ 22860411 (-) True G229626
TU311503 lncRNA downstream 356685 22846854 ~ 22847083 (-) True G229624
TU311494 lncRNA downstream 458669 22741374 ~ 22745099 (-) True G229616
TU311713 lncRNA upstream 74473 23283529 ~ 23284051 (-) True G229782
TU311715 lncRNA upstream 76511 23285567 ~ 23286896 (-) True G229784
TU311705 lncRNA upstream 89653 23298709 ~ 23313086 (-) True G229774
TU311733 lncRNA upstream 204060 23413116 ~ 23413758 (-) True G229802
TU311805 lncRNA upstream 318049 23527105 ~ 23527539 (-) True G229867
XM_039792152.1 mRNA downstream 16006 23177186 ~ 23187762 (-) False LOC120553577
XM_039792151.1 mRNA downstream 16006 23177186 ~ 23187762 (-) False LOC120553577
XM_039792150.1 mRNA downstream 16006 23177186 ~ 23187762 (-) True LOC120553577
XM_039792153.1 mRNA downstream 17157 23177186 ~ 23186611 (-) False LOC120553577
XM_039791094.1 mRNA downstream 87347 23092819 ~ 23116421 (-) True LOC120553037
XM_039791006.1 mRNA upstream 20027 23229083 ~ 23275543 (-) True cmah
XM_039791651.1 mRNA upstream 320701 23529757 ~ 23531807 (-) True phax
XM_039791654.1 mRNA upstream 353104 23562160 ~ 23588760 (-) True dnajc2
XM_039791653.1 mRNA upstream 385296 23594352 ~ 23617076 (-) False slc26a5
XM_039791652.1 mRNA upstream 385296 23594352 ~ 23617075 (-) True slc26a5
TU311319 other downstream 1392671 21771136 ~ 21811097 (-) False LOC120553090
TU311312 other downstream 1392737 21771088 ~ 21811031 (-) False LOC120553090
XR_005638087.1 other downstream 2058235 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 2245548 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 3081429 20067036 ~ 20122339 (-) False rerg
TU311825 other upstream 482965 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 490641 23699697 ~ 23700198 (-) True G229907
TU311926 other upstream 699500 23908556 ~ 23914692 (-) True G229950
TU311924 other upstream 703045 23912101 ~ 23914692 (-) False G229950
unassigned_transcript_1528 other upstream 1367894 24576950 ~ 24577021 (-) True trnap-agg_20

Expression Profile