RNA id: TU311733


Basic Information

Item Value
RNA id TU311733
length 618
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G229802
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23413116 ~ 23413758 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagggctgggtaccgaacgtcgatacttttatggtatcgaaaaaaaaattctttatctttcggtgccaaatttcggttccaaaagcgtctgagcgcgtaagcccaagcttatctgtcctctctgcatattgacacagagcggagctccgaccgactaggcctggcaaactcgattcctttttaggattcaggttattctgagtcactcactaaactgatccgggttgtgcgagtcacttgaatcacttgagtcagtattgtatgctacatccaaggcgagcttttgatttggataaaatgccatgttttcatttagaatcttttaattttatttgaaaaaaatatccataaatataaatggtctgaaagaaaaccgaatattcatttaaaaatgacatggaaTTATATTTCTTAACTTTAATaggactgacaaataagaaagccatctggactctgaacatttacaatgacttaaaatctctttaatgtaaattccatgcgcccctttttcatgtatgcactgtatgcatttaatgttttaaatgtgtatgtgcatctgtatttgaataataaagttttgtgaagtaaaaaaaaaaaaacatgagttgtCGGCGAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311705 lncRNA downstream 100030 23298709 ~ 23313086 (-) True G229774
TU311715 lncRNA downstream 126220 23285567 ~ 23286896 (-) True G229784
TU311713 lncRNA downstream 129065 23283529 ~ 23284051 (-) True G229782
TU311697 lncRNA downstream 204060 23203768 ~ 23209056 (-) True glipr1a
TU311672 lncRNA downstream 292687 23046595 ~ 23120429 (-) True G229748
TU311805 lncRNA upstream 113347 23527105 ~ 23527539 (-) True G229867
TU311811 lncRNA upstream 124490 23538248 ~ 23560342 (-) True G229872
XR_005638123.1 lncRNA upstream 209822 23623580 ~ 23641504 (-) True LOC120553168
XR_005638124.1 lncRNA upstream 276761 23690519 ~ 23711804 (-) False LOC120553170
TU311853 lncRNA upstream 288946 23702704 ~ 23707197 (-) True G229908
XM_039791006.1 mRNA downstream 137573 23229083 ~ 23275543 (-) True cmah
XM_039791993.1 mRNA downstream 202619 23205434 ~ 23210497 (-) False glipr1a
XM_039792151.1 mRNA downstream 225354 23177186 ~ 23187762 (-) False LOC120553577
XM_039791651.1 mRNA upstream 115999 23529757 ~ 23531807 (-) True phax
XM_039791654.1 mRNA upstream 148402 23562160 ~ 23588760 (-) True dnajc2
XM_039791653.1 mRNA upstream 180594 23594352 ~ 23617076 (-) False slc26a5
XM_039791652.1 mRNA upstream 180594 23594352 ~ 23617075 (-) True slc26a5
XM_039791277.1 mRNA upstream 263410 23677168 ~ 23684068 (-) True cbll1
TU311637 other downstream 173543 23104760 ~ 23239573 (-) True G229716
TU311319 other downstream 1602019 21771136 ~ 21811097 (-) False LOC120553090
TU311312 other downstream 1602085 21771088 ~ 21811031 (-) False LOC120553090
XR_005638087.1 other downstream 2267583 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 2454896 20957657 ~ 20958220 (-) True G229199
TU311825 other upstream 278263 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 285939 23699697 ~ 23700198 (-) True G229907
TU311926 other upstream 494798 23908556 ~ 23914692 (-) True G229950
TU311924 other upstream 498343 23912101 ~ 23914692 (-) False G229950
unassigned_transcript_1528 other upstream 1163192 24576950 ~ 24577021 (-) True trnap-agg_20

Expression Profile