RNA id: TU311825


Basic Information

Item Value
RNA id TU311825
length 526
RNA type TUCP
GC content 0.52
exon number 3
gene id LOC120553170
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23690519 ~ 23711804 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTAGCTGGGTGctagtgggcggggcttatcaATGAACCGCAGGTGCTCAGAGTTGATGAGAAGATGGAGTCTCGGCGAGCTGGAGGACAGACTCGGTCCTGTCGCGTTTTCGTCACCTTTGCGTGTGGCCTGGAAACCCGAACGCCTTGTATTGCCAGCTTTGTTTGCTTTTCGACCAACCACTTATAATATAACCTTGAACTAGACACCATAAACCGCAGAAGACGGGGCTGGTTGCTTAATTGCGTGGAGCTGCTGATGGAGTTGGCGGAGGTCGCTGTTCCAGGCGTCAAGGATCCTCTGTACCAGTTGACACTTCTGGAAAAGCTGAGGGATCGACAGAAACACAGAATGAAGGAAGTACACAAAGACATTAAGAGTGCTTACATGGAGGACCTCCTGCCTCAAGGGGGCAGGCTCCACACAACTGATGAGGCGAAGCAGCAGGTCCATCATGGCAGAGGCGTCAATGTGTTTCAGCACCAGACCAATGAAGCCTTCCTTTTTCTTTAGAAAGGTAATCA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638123.1 lncRNA downstream 50517 23623580 ~ 23641504 (-) True LOC120553168
TU311811 lncRNA downstream 131679 23538248 ~ 23560342 (-) True G229872
TU311805 lncRNA downstream 164482 23527105 ~ 23527539 (-) True G229867
TU311733 lncRNA downstream 278263 23413116 ~ 23413758 (-) True G229802
TU311705 lncRNA downstream 378935 23298709 ~ 23313086 (-) True G229774
TU311856 lncRNA upstream 1661 23713456 ~ 23713677 (-) True G229909
TU311901 lncRNA upstream 147265 23859060 ~ 23859758 (-) False LOC120553046
TU311929 lncRNA upstream 234702 23946497 ~ 23948780 (-) True G229952
TU311966 lncRNA upstream 368732 24080527 ~ 24081153 (-) True G229987
XR_005638165.1 lncRNA upstream 405937 24117732 ~ 24202125 (-) True LOC120553435
XM_039791277.1 mRNA downstream 7953 23677168 ~ 23684068 (-) True cbll1
XM_039791276.1 mRNA downstream 7960 23677168 ~ 23684061 (-) False cbll1
XM_039791653.1 mRNA downstream 74945 23594352 ~ 23617076 (-) False slc26a5
XM_039791652.1 mRNA downstream 74946 23594352 ~ 23617075 (-) True slc26a5
XM_039791654.1 mRNA downstream 103261 23562160 ~ 23588760 (-) True dnajc2
XM_039791559.1 mRNA upstream 6544 23718339 ~ 23809346 (-) True sbf1
XM_039791102.1 mRNA upstream 146424 23858219 ~ 23863974 (-) True LOC120553046
XM_039791068.1 mRNA upstream 156361 23868156 ~ 23885592 (-) True glt8d2
XM_039792024.1 mRNA upstream 354614 24066409 ~ 24109573 (-) True net1
XM_039792025.1 mRNA upstream 354614 24066409 ~ 24109572 (-) False net1
TU311637 other downstream 452448 23104760 ~ 23239573 (-) True G229716
TU311319 other downstream 1880924 21771136 ~ 21811097 (-) False LOC120553090
TU311312 other downstream 1880990 21771088 ~ 21811031 (-) False LOC120553090
XR_005638087.1 other downstream 2546488 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 2733801 20957657 ~ 20958220 (-) True G229199
TU311926 other upstream 196761 23908556 ~ 23914692 (-) True G229950
TU311924 other upstream 200306 23912101 ~ 23914692 (-) False G229950
unassigned_transcript_1528 other upstream 865155 24576950 ~ 24577021 (-) True trnap-agg_20
XR_005638196.1 other upstream 1479988 25191783 ~ 25217693 (-) False sult4a1
TU312561 other upstream 1883785 25595580 ~ 25601366 (-) False LOC120553115

Expression Profile