RNA id: TU311926


Basic Information

Item Value
RNA id TU311926
length 2034
RNA type TUCP
GC content 0.47
exon number 6
gene id G229950
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23908556 ~ 23914692 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGGTTTTTGACAAAGATTTTTTACTTTGCAGTACAGAAATCATTAGAGCCCAagatgggtttgttttctttttaaagttgtTCCAAGACAAAATATATCACAGGGCTCTCATCAATTCAATACTGCTGCAGTACACATTTGGTCCTTCTTAAGCAATTACAGTCAACCAACCCTTCCCATTAATCTGCTGTTAATGCTCGGGTCTTCCATCACTTTGCATGATACAGGAACTAAAATATCTCTTCTGCCTTATAGTAACTCAAGCCGTTGAGAGCGGGTTTGCGTAGTTTATGCTGGACTACAGTCGCCCTTGTGGCTTGGCTTGTCACGTGCATCTGGCTGTGCTGGAGAatagacaggaagagagggttAAAAAGGACACCAAAAAGATTGAGCCCACGCACCCCTTAACCACTTTAATGGCTGACGATATAAACTGATGGCTGGGGTGCCCCCTTGCACGGCTGTCTGCTGTTGATGGGCCTGAATGCGGCCGCCCCTACCCTGAGAGGAACACCCCGTCACACATGATTTAAATTCAGACGCACAAAGCCAAGCCACGTCTCACTCGCTCTCACACCCTGacatgaaaaaaatactttgcagAGACCAATAACTGATGTATAGATATTATTTATCTTCAAAACGCCTTTTATACAATGACAGAAAAATTgcaccccaccccccaccccctcccctatCACATATACCCACTCTGTAAGATGATGATTATGAATCTTCATTTGATTTGGCATCTTTGGACTATGCATCATTTTAACATGATGAAGCAGAAGAATGTAGGGTATTAATGTATATTAGGCATAACCAGTGTTTAGTGCAACATCCATCtgaatgtgatttaaaaaagcaTAGCCCCCAAACCCTGTCCAACAATACTCTATCATAtctccctatatatatatatcatggaCTTCCTAAAAAGGGGCAAACCATAGACTTGGATGATCAGCCAGCCCATAGGTGTGTACATGTTTTGTGTAGGTTTTCTATTTTTTGTAAGATTTCAGTTGTCGGCAGCGTTGTTCTTTGATATCAGGAGTGTTGCGGATGCTTTCGCCTCTAGTCTGCGGCATCACCGAAGGTGTCCTGCTTCTTGCGCTCCATCTCGGCAAAGTCAAATTCCGAGCCCGTCATCCTCTTGTAGATGTCTTTGATGTCGTCACAGGTGGTCTCGAAGTGAGTGGTGGCATCATACGTACGGGAGATGAAAACTGGCTGTCAGTGCCCATGTCAGTGGGTGCATACTGGTCACTAATACTGACAAACTTCTGCTCAATGGGCGTCAGTAGGTCCAGGGCCGGCTTGATCTCTTTCTCGGGGTCGTTTGTCTCCACTGTGGTGCTGACGATGGCAACATATTTACCTTGTGCCGCCACGTTGTGAGCAAAGGAGATCATACAAACGTAGATGTCATGTTTCCTGTTGACCTGATTCTGGGGGATGATGATCTGGCACGAGTTGACGTCGCCAGTGTTGCCTATCGGGTGACTCAAGATGCAGATGACTCTGATCACCTGACCCACTTTGGTGACGCGGTCCATGGCGTAGCTGGGGTCGCAGATCAGCTGCTTGCACCTGGCGATCTCCCTCAGACTTGACTCCCACCACCTTCCCATTCTCTACCACGATCTCGTCTATGGGCTTGTTCAACATATACGTCCCCCCGTAGATAGCACTCAGCCTGGCAAACCCTTGTGGCAGTTCTCCCAGGCCGTACAGTGGGTAGAGGTATGGGCTCTTGCCGTATCTGGCCAGAGACTCACTGTAAAGCTTGATCCTGTTTATAGTTTCGATGCAAGGTTGATCCAGGTATTCGTCTGTGCGGTAGAGGGCGAGGGAGTGGCCGGTGAAGTCGATGACGTCCTGGCCCAGGTTatactttttgaaaatgtcccTCATAGTCGACTGCTGGGGGTCGATGCCTTCCATGGTTTTGGGGTTGCTCTCGTCAAAGTTGGAAATGAACTGAAGGAAGTTTTTGAAGCGCCGTTTCTCAAACAACCCCATGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311901 lncRNA downstream 48798 23859060 ~ 23859758 (-) False LOC120553046
TU311856 lncRNA downstream 194879 23713456 ~ 23713677 (-) True G229909
XR_005638124.1 lncRNA downstream 196752 23690519 ~ 23711804 (-) False LOC120553170
TU311853 lncRNA downstream 201359 23702704 ~ 23707197 (-) True G229908
XR_005638123.1 lncRNA downstream 267052 23623580 ~ 23641504 (-) True LOC120553168
TU311929 lncRNA upstream 31805 23946497 ~ 23948780 (-) True G229952
TU311966 lncRNA upstream 165835 24080527 ~ 24081153 (-) True G229987
XR_005638165.1 lncRNA upstream 203040 24117732 ~ 24202125 (-) True LOC120553435
TU312050 lncRNA upstream 289338 24204030 ~ 24225411 (-) True G230067
TU312090 lncRNA upstream 400391 24315083 ~ 24315857 (-) True G230089
XM_039791068.1 mRNA downstream 22964 23868156 ~ 23885592 (-) True glt8d2
XM_039791102.1 mRNA downstream 44582 23858219 ~ 23863974 (-) True LOC120553046
XM_039791559.1 mRNA downstream 99210 23718339 ~ 23809346 (-) True sbf1
XM_039791277.1 mRNA downstream 224488 23677168 ~ 23684068 (-) True cbll1
XM_039791276.1 mRNA downstream 224495 23677168 ~ 23684061 (-) False cbll1
XM_039792024.1 mRNA upstream 151717 24066409 ~ 24109573 (-) True net1
XM_039792025.1 mRNA upstream 151717 24066409 ~ 24109572 (-) False net1
XM_039792026.1 mRNA upstream 151717 24066409 ~ 24109439 (-) False net1
XM_039792028.1 mRNA upstream 151717 24066409 ~ 24072805 (-) False net1
XM_039791667.1 mRNA upstream 342091 24256783 ~ 24284709 (-) True podxl
TU311825 other downstream 196761 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other downstream 208358 23699697 ~ 23700198 (-) True G229907
TU311637 other downstream 668983 23104760 ~ 23239573 (-) True G229716
TU311319 other downstream 2097459 21771136 ~ 21811097 (-) False LOC120553090
TU311312 other downstream 2097525 21771088 ~ 21811031 (-) False LOC120553090
unassigned_transcript_1528 other upstream 662258 24576950 ~ 24577021 (-) True trnap-agg_20
XR_005638196.1 other upstream 1277091 25191783 ~ 25217693 (-) False sult4a1
TU312561 other upstream 1680888 25595580 ~ 25601366 (-) False LOC120553115
TU312668 other upstream 2265859 26180551 ~ 26196487 (-) False mkrn1
TU312734 other upstream 2461000 26375692 ~ 26381365 (-) True G230594

Expression Profile