RNA id: TU311929


Basic Information

Item Value
RNA id TU311929
length 2284
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G229952
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23946497 ~ 23948780 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTGACAGAAGCGGTGTTGTCAGGATGAATCATCTATGTACTGTTCTTAGACTGTGTTTACCAGAATAAGTTGGCAGACAGTCCAGTCCAGTCCAGTCTAGTCCAGTCCAGTCCAGCACACATGTATGAGAGCCAGGTTCATGCAAAAACACAAGGACATCAAGCACGTCAACAGTACAATTTATTCAATAAATCAACATATTCAGAGCATCGCTTCTGTACAGCTTAGTAAGATAAATATTTATGACACATTTTGTGGGTTGGTTCTTCAGTTGTTTTGTAGCACCTTAAacgagacaaacacacacaggactttcacccaggagagcggggtTCGATtcccgtttgaaaataaaagtacacaGCGGAAGTCCCGTTCAGCATCACGTGCCTAACCGGAAGTAAAGTAACGTgggattttaacccaaaccacgatgtttttctaaacttatcaaagtagttttggtgcctaaacataaccaaactgcgactgtttcacaacgttaacgtgTATAAAATTGCGACCTTAACGTTCAAAACAGCGGCcgttacgttctctggtttagacaTTAGGTTGTATTTCCTGCCGCCACTTCTGTGGATCGTATTAGAGCATGGGCAtttctcaataccaagaatgcaaagtacggacttgtgttcttggggagaacgttcttgctggttggGAATTAACTCccaagttcacaagcacagaaaacgctgaaagtttgagacgatgcgttcttcctgttattgctcaacacccccagcacagaggctacctgcagggctccaaaatactagctagaaataaaaaccacaacaatataaccactttgtattaaaacaatctccggacaagaaaacctcataatgctacaactattgcaataatgttgaaaaataaaactaattgagctttaatttgattgtttatggtttagctcaaacaccccttacttattcaaaagagtggaacgtgatccctactattattagcatataagtttaagtcagtttaaattaaacaaataaataggcctatgcactggtgtgtcctatgtgttcctattagtgttatgtggaattatcatttctatattattgtagtgcactgtatatgcccagggagatggaaattagaaattcaaattataaaggttggtgtctcccctttagtctacataacatgtcatagccactttatgtacaactgttcatttatcatacagactgaaactcaacttctaataaatcagaagacaaatacaccaaaaatatgaactaaatacaaaatataatgtatgctatagcctatggcataatttaaacaagtctcccgaaaagaGGCGGGTATATCTCATggactaataatatacagtctatctatggtatatctctcctctgcctgctgcgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgttgagtttaactccgaaaagacagttaaccacatgtgttgtgatatttaaacaaacgatccgaaacggcgaaataaaagcctcttatttacgggaccggtctaaaagacctccgTCTTACAGCGGGATATCCGAGTGGGACTGTCCGAGCGCCGAGCaagcggccccggcaggcgcaagctggcggccgcgtcattttatggagctccgaaaaCAGTGGGGAGAGAAAACTTTGGAgaaaattgtcaattcggcaaagattttcgcgagactgcctatattcgaaatataaaccgttcatttctcacctaaaatgttctcagaagtgaatttagtgatgaataagatggcgaaaattgttaaaattgtcccgtttttgggctgtctatgtactggaaatccaaccatcattgaatgccgaaatgaatgttgggatacaggtgctgcgaagttcatacaagttaccaaccaaTGCATCCTCGgtaaatgggcgtgtcaagaataCATCCGGGAAATTTAACTGTTCTTGAAACAAgttgtaaaaaaatgtaatcatcgttttgcttgatttgctaaactctatgatggctaaggaactctttgctgacttttgtagggctttatgtcgTGACCAAAGTGAGACAAAAGTCAAAAAGAGTGACTAAACGTCTGATAAACCCcccaaaaagtcagaaaaagcaacaaaaatggcGACATGCAGTATTCCACGGTAATAGATATTTTAATTTTTCCGATGTatgcacgtcaataaactctccatgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311901 lncRNA downstream 86739 23859060 ~ 23859758 (-) False LOC120553046
TU311856 lncRNA downstream 232820 23713456 ~ 23713677 (-) True G229909
XR_005638124.1 lncRNA downstream 234693 23690519 ~ 23711804 (-) False LOC120553170
TU311853 lncRNA downstream 239300 23702704 ~ 23707197 (-) True G229908
XR_005638123.1 lncRNA downstream 304993 23623580 ~ 23641504 (-) True LOC120553168
TU311966 lncRNA upstream 131747 24080527 ~ 24081153 (-) True G229987
XR_005638165.1 lncRNA upstream 168952 24117732 ~ 24202125 (-) True LOC120553435
TU312050 lncRNA upstream 255250 24204030 ~ 24225411 (-) True G230067
TU312090 lncRNA upstream 366303 24315083 ~ 24315857 (-) True G230089
TU312120 lncRNA upstream 530314 24479094 ~ 24479656 (-) True G230118
XM_039791068.1 mRNA downstream 60905 23868156 ~ 23885592 (-) True glt8d2
XM_039791102.1 mRNA downstream 82523 23858219 ~ 23863974 (-) True LOC120553046
XM_039791559.1 mRNA downstream 137151 23718339 ~ 23809346 (-) True sbf1
XM_039791277.1 mRNA downstream 262429 23677168 ~ 23684068 (-) True cbll1
XM_039791276.1 mRNA downstream 262436 23677168 ~ 23684061 (-) False cbll1
XM_039792024.1 mRNA upstream 117629 24066409 ~ 24109573 (-) True net1
XM_039792025.1 mRNA upstream 117629 24066409 ~ 24109572 (-) False net1
XM_039792026.1 mRNA upstream 117629 24066409 ~ 24109439 (-) False net1
XM_039792028.1 mRNA upstream 117629 24066409 ~ 24072805 (-) False net1
XM_039791667.1 mRNA upstream 308003 24256783 ~ 24284709 (-) True podxl
TU311926 other downstream 31805 23908556 ~ 23914692 (-) True G229950
TU311924 other downstream 31805 23912101 ~ 23914692 (-) False G229950
TU311825 other downstream 234702 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other downstream 246299 23699697 ~ 23700198 (-) True G229907
TU311637 other downstream 706924 23104760 ~ 23239573 (-) True G229716
unassigned_transcript_1528 other upstream 628170 24576950 ~ 24577021 (-) True trnap-agg_20
XR_005638196.1 other upstream 1243003 25191783 ~ 25217693 (-) False sult4a1
TU312561 other upstream 1646800 25595580 ~ 25601366 (-) False LOC120553115
TU312668 other upstream 2231771 26180551 ~ 26196487 (-) False mkrn1
TU312734 other upstream 2426912 26375692 ~ 26381365 (-) True G230594

Expression Profile