RNA id: TU311966


Basic Information

Item Value
RNA id TU311966
length 260
lncRNA type intronic
GC content 0.37
exon number 2
gene id G229987
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24080527 ~ 24081153 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcacatacagtattaggggaccactaaggtctatataaaagcatccaaagagc

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311929 lncRNA downstream 131747 23946497 ~ 23948780 (-) True G229952
TU311901 lncRNA downstream 220769 23859060 ~ 23859758 (-) False LOC120553046
TU311856 lncRNA downstream 366850 23713456 ~ 23713677 (-) True G229909
XR_005638124.1 lncRNA downstream 368723 23690519 ~ 23711804 (-) False LOC120553170
TU311853 lncRNA downstream 373330 23702704 ~ 23707197 (-) True G229908
XR_005638165.1 lncRNA upstream 36579 24117732 ~ 24202125 (-) True LOC120553435
TU312050 lncRNA upstream 122877 24204030 ~ 24225411 (-) True G230067
TU312090 lncRNA upstream 233930 24315083 ~ 24315857 (-) True G230089
TU312120 lncRNA upstream 397941 24479094 ~ 24479656 (-) True G230118
TU312121 lncRNA upstream 398554 24479707 ~ 24481679 (-) True G230119
XM_039792028.1 mRNA downstream 7722 24066409 ~ 24072805 (-) False net1
XM_039791068.1 mRNA downstream 194935 23868156 ~ 23885592 (-) True glt8d2
XM_039791102.1 mRNA downstream 216553 23858219 ~ 23863974 (-) True LOC120553046
XM_039791559.1 mRNA downstream 271181 23718339 ~ 23809346 (-) True sbf1
XM_039791277.1 mRNA downstream 396459 23677168 ~ 23684068 (-) True cbll1
XM_039791667.1 mRNA upstream 175630 24256783 ~ 24284709 (-) True podxl
XM_039791878.1 mRNA upstream 284185 24365338 ~ 24375224 (-) False LOC120553465
XM_039791877.1 mRNA upstream 284185 24365338 ~ 24375224 (-) False LOC120553465
XM_039791875.1 mRNA upstream 284185 24365338 ~ 24375224 (-) False LOC120553465
XM_039791876.1 mRNA upstream 284185 24365338 ~ 24375055 (-) True LOC120553465
TU311926 other downstream 165835 23908556 ~ 23914692 (-) True G229950
TU311924 other downstream 165835 23912101 ~ 23914692 (-) False G229950
TU311825 other downstream 368732 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other downstream 380329 23699697 ~ 23700198 (-) True G229907
TU311637 other downstream 840954 23104760 ~ 23239573 (-) True G229716
unassigned_transcript_1528 other upstream 495797 24576950 ~ 24577021 (-) True trnap-agg_20
XR_005638196.1 other upstream 1110630 25191783 ~ 25217693 (-) False sult4a1
TU312561 other upstream 1514427 25595580 ~ 25601366 (-) False LOC120553115
TU312668 other upstream 2099398 26180551 ~ 26196487 (-) False mkrn1
TU312734 other upstream 2294539 26375692 ~ 26381365 (-) True G230594

Expression Profile