RNA id: TU312075


Basic Information

Item Value
RNA id TU312075
length 338
RNA type TUCP
GC content 0.55
exon number 2
gene id LOC120553083
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24309542 ~ 24314707 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGGAGACCTGCTGGACTTCAGAGACCGACCGGGGACCACTACAAGAAAGGACATGGAGGAGGACACCCAGAACCCGGAGCAGCAGAGCAACAGCGTTCCCGAAAGACAAGCAACAGGCCCGTCCTCTGGTACCAACAatgttcagAAACGTGGGGGACAAGAGGCACGTCCCAAGTCTCACCAGGGACTTGAGACTGGAGCGAAACCACACAGCTGCGACCACTGTGACAAAGTTTTCAAAAAGATGAGTCACCTGAAAAACCACCAAAGCGTCCACACCGGGGACAAGCCGTACAGATGTGACCAGTGCGGAAAAGGTTTTGCGAGGGCAGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311993 lncRNA upstream 45871 24260059 ~ 24264065 (+) True G230011
TU311974 lncRNA upstream 193815 24112965 ~ 24116121 (+) True G229994
XR_005638178.1 lncRNA upstream 214771 24088025 ~ 24095165 (+) True LOC120553514
TU311959 lncRNA upstream 214771 24088025 ~ 24095165 (+) False LOC120553514
TU311953 lncRNA upstream 242947 24065214 ~ 24066989 (+) True G229976
TU312111 lncRNA downstream 169372 24482310 ~ 24485517 (+) True G230109
TU312222 lncRNA downstream 483015 24795953 ~ 24798741 (+) True G230192
TU312293 lncRNA downstream 871874 25184812 ~ 25191943 (+) True G230249
TU312317 lncRNA downstream 1038939 25351877 ~ 25352174 (+) True G230260
TU312312 lncRNA downstream 1049961 25362899 ~ 25373424 (+) False LOC120553523
XM_039792460.1 mRNA upstream 1492 24301765 ~ 24308444 (+) True ift46
XM_039792096.1 mRNA upstream 60429 24209619 ~ 24249507 (+) True mkln1
XM_039792097.1 mRNA upstream 61474 24209619 ~ 24248462 (+) False mkln1
XM_039792350.1 mRNA upstream 365750 23934300 ~ 23944186 (+) True LOC120553686
XM_039792347.1 mRNA upstream 376060 23924156 ~ 23933876 (+) True asb13a.1
XM_039791874.1 mRNA downstream 7338 24320276 ~ 24365349 (+) True LOC120553464
XM_039792239.1 mRNA downstream 71960 24384898 ~ 24478763 (+) True chst11
XM_039792240.1 mRNA downstream 71960 24384898 ~ 24478763 (+) False chst11
XM_039792452.1 mRNA downstream 253303 24566241 ~ 24571321 (+) True nopchap1
XM_039791095.1 mRNA downstream 284412 24597350 ~ 24604947 (+) True LOC120553040
unassigned_transcript_1527 other upstream 422512 23887337 ~ 23887424 (+) True trnay-gua_62
TU311873 other upstream 461312 23833031 ~ 23848624 (+) True adm2a
TU311874 other upstream 461312 23833031 ~ 23848624 (+) False adm2a
TU311875 other upstream 461312 23833031 ~ 23848624 (+) False adm2a
TU311876 other upstream 461312 23833031 ~ 23848624 (+) False adm2a
TU312157 other downstream 307874 24620812 ~ 24778258 (+) True G230148
TU312620 other downstream 1725349 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 2059798 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 2059798 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 2756139 27069077 ~ 27072552 (+) False LOC120553194

Expression Profile