RNA id: XM_039792040.1


Basic Information

Item Value
RNA id XM_039792040.1
length 4426
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120553523
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25362882 ~ 25373996 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGCTCTGCTGTAGAACATTCTAAATATCCTTTACAAAATGCATCTGTTGACAAGAGTGCATCAGTAGATTTTGATttgtctgtaaaaaaacattgggATGTAACTATGCCTGCAAATGAATATTGCAAAACTGTTTTTTCAGATGACTGTGAAGATGAAACATGTGTCAGAAAAAATTATGAAGGTTTCTATAGTAAATGGTGTGATAAGTACATACAGAATGGCATGACAACCATTCATTATTCATTAACTGCACTGAAGGAGCTCATTGCTAGTCTGGAAAATGTACAGGACATTGGCGAGATGGAGAACCTTTCTAAAGTCATACTGCAACAATACTGGAATGGGAATATAGATAACATTCATCTCTTTACATCCACAGAATATCCACGAATAATGGACGTTGCTGCCACTTGCACAAAGAGTGAAGATGAGAGTCCAGTAGTTCTCACAGCGGTGCCTGAAATGATCTGGGATGAACTGACTGAGAAGCAGCCGAGTTCACCTGATGTCTCGGAGGATCTTCAAACAAAGTCTAGTTCAGTGGCATcggaaaacaaaacatttgaaccCCTGTCGGTCATTGAAAAGCAAACAATTGAAGATCGCCAACAGTGCGGTGTTACCTGGAAGGAAGTAAATCCACATTCCCAGCCAAATTCAGCAGTTGATAGGATTCAGATTCTTAACATAGTATCACTTTTTACAAACCAAAGTGAAGGTGTGAGTGAGGGTGCAGGTTCTGTGCATTTACAAACTGATTTAAGCACAGCACTTTCTGAAAACAAAGAACTGGTTGTAAAAAATCCACAATATGAGGACATTTCAGATGATGACCCCTCCCAGCCGGCAACAGAACTCCCAACAACAGAGCGGTTTCTCTCAGCGGGTCCTGAAGACCCACAGTATGAATTTATTAGTGAAGAGGAAAGTCCACAGATTGAGTCTATGGCTGTGGAGACCTCTTCACCTACACAAGTAACTGTACTCAACAATACTGAGTCACCATTTGAAAATGAAGACTATGGACATTTGCAGGGACCGGCTCAGACGGACACAGTAATCATTTCAGTTGAGGAACTGGTTCCAAAGAAGCAGGTTTCACCAGACACAGAAAGACGTGATATAGTACATTGTTCTTCTCCTTTTGTTGAAACCGATGAAACTGGTGCATTATACCCTAAATATGACCGTGGTCCTTTCTCTGAAGATgagactgatgatgatgatgatgatgatgatgatgatgatgatgactggTTATTCATTCCTATAAGCATATCAGACCTCAAATTTGAATCTGATAATGAAGACCAGGATAGCCCAGACATACATGTGCTAGATGATGGGGAAACAGGAGACCAAGAAAGACAATGTGACACAAGCCCAACACACTGGCCATCTCCGAATCGAGTACCAGCTTTTCCTCCTTCCCAGATCGAGACATTTGACACTTTGGCCAGCTTTATGAAACAAGCATTAGGCAGGAGCACACCAGAACATGGACTGGACTCTGAGGGAAAACCACAACCAACTAAGAACAGGAGAGAGTCTGTAGACAGCTGTGCAACTGAAGACAGTTGTGATTACTCCTCTGCATTAGGACACAACTATTTGACAGTGTCCAGTTTGAGGTCAGCACCTCTGCTCTCAGAGACAGATGATTCGGAGGATGAAGGCAATGCTGTTACAGATATGGACATTATAATCCTTGATTCGGAGGATGAAAGTGACCAAAACTGCAAAAAGAAGGCTGAAACCGAAGGAAGGCCTGAAACTATGGACAGTCAGCGTGGAACTGTTAAAGAAAAGTTTCAAAAAAAACGACCGCTACCTGTTGACTCATCAGCAGCCCGGCACCAACCCATACATCAGGACACACCGTTTGAAGAAGTGACGCAGGATGCGCGCTCCGACCCGTCTCCCAGCACAGAAATGATCGGGCAGCCGATTGAAGCCAAAGCTGCCTCTGAAGAAATTGTTATAATCATTGACTCGGATACGGACGATGACGATGACCAAAACTACATAACGCCAAGGAGGAACAGCATTTCATCCTCTGGGTCGGACAGTGGGGACGCCCCATGTGTGGAACAAAACCAACCGTCCCCTAAAACTGTGGACAGGGAGTATAGAACGGCTAAAGAAAGTCTTCTGGAAACCACACGGTCTGTTCCAAACCCATCACTGCCACATCCCCAGTCGACACTTCAGGATACCCAATTAAAAGAAGTGACGCAGGATGCATGCTCTGACCTGTCAGACGGTAGAGAAAAGCGTGGGCAGCTGATGGAAGCTAAATGTGACTCTGAGCGTGTTCAACACAAGACCAACCGACAAACGACCTcaaaaagaaaggctttttgtGATTCAGGAAAAGtggttgaaaaaagccatttcAGCAAAAagaaggcaaaaacaaaaggaatACTCTCATCAGGATCGGAAGACGGTGGCGATTCCTTACGTGCTACCAAAAACAGACCTTCAGCTGAAACTGTGGATCGTCTTCGTGGGACTGCTAACGGAAAGCAGCCTAAAAAAAGCAAACTGTCATCTGAAGATTCTTCAGAGAAGCAGCCCCAATCAGTGTGCAGGGAGGCAGAGTCTACCCTGGGTGACGGTCCTGTTATTCCTCGCTTTGTTCTTGTGAAGCCTCCTCAACACGATCAATCCTGGAAACTTTTGAAAGAAACGGCAGTCCGCGGGCAGGGTAAAGCTGGATCTCGGTCTCCAAAGACGTCCACGGCATCCAGCAAAAATACTGACTCGTGCGCAAATAAAAAAGTAAGATTTGTGCTCACGTCAAAACCTGCAAATGACCAACGCCATACAACCGAGAACATTCAGGCTACCGTAAAACCCATAATCTTTTCAAGGCAACATTCCTTACCTACCTTCAGTAGCTCGTCTTCCACCAGTGACCATCTTTCTGAAGCCAGACAGAGCTCGTCCTCCTCAAGAGATTTTACTCGGTCCGTTAGTCTTCCTGCAGCTAAGCAGAGCACATCTATTCTCAAACACGTGTCTTCGTCCAGCCTACAGCGGTCTCGCTTCTACAGCAACCCCTCAACTTTAAACCCCCCTGACAGTCCCACCAAAGGGCCATCATCTTCTGGAGCCAtgcaaagtttaaaaaaaaaacgggcgAAAGAAATCTGGGAGCAGAGCTATATCCCAaccagaaaagacaaaaaaactagCCCGGGGATGAAGGAAGACTTGAGAACCACCACAAATCATTTGAAGAGGGCAGCTAGACCAGATCATAGACGGAGGCAAAAGTCCCAAAAGTCGTCAACCCCCCTGATGAAGAAGTCCAAGATTGAGGCCATAGGGATGACCAAGGCCGCGGCCATAGAGATGACAAAGGCCGCAGGTCGGGATCCCCCTGGAGAACAAAGAAACTGTGTGGGTGATCATTACAAGTGGTCAGAGAAGCCAACCGTGGCAAAGCCAACAAAAGGTTCCAGCAGGGAGGGAATAAGGTATAGACCCCATCCAAAAACCCATTGGTGAGAAGATGATGCCCGGTTCTGTGAATCTGTCTCCAGTTTGTTCCCACTCCCAAAGTGAAAGGTGGTTGATCGGCGAAAAACAAGTTACTGCTTAAATCTTTTCATTTTCCATAGCATTTTCTGTATTGCAAcggtttgtgtgtatgtgtatactgtttactattatattatatcaGCTCTTAGTGGTAATGGCGTTGTTTTTGAATGTCTTGTGTCTACGGGAAACAAATGTTCTTTTTACGAGCTACCTCAAATTGTATTAAAATTCAGCGTTATGTTAAATCTTTTTCATCTTAAAAGTCACAGATATtttgatctttttttaatatgtcacatttttggatattgttttttttttgtactttcatAAATGATAATGTATCACTTTTTAAAATGGTAATGTGAAAATGCATAAAAAATCAAATGGATTCATTGCTGTTTTGTCTTGTGTGCTCTTGTGCTTCGCCCTTAGAGGGAGACATTGCAGTAGTGTATGTGTTAAACCATACAGTGTAACATGTCAAATGTTGGCTCCGTAGTATTAAGTTTGTGTCATACAGTTCAGCAGCTGGGTTACTGCTCTGATGGAcgtgggccgggctcggacagaaaaatgcggcccgatccgcactctagtaCGTACCTCAGTCAATATTTGGTAAATCCAtcactttttctctttcagtaGTTGACCATCTTGCATCACAAAGTTGAATTAATTTGTGTGTAATGGAATGAAAGTAGATCCAGCACGTATCTATAGGCTGGTATGACCAAATCTATTTTTATGACTAGAGTTGACATCTCAGAAGACCTAAGACCAATGTTCACGTCTAAAATGTGTACAAAGAGAATCTTGTTTCAGCCAACAATAGGCTATCTATCCAATAAATCgggtcgtctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312317 lncRNA upstream 17082 25351877 ~ 25352174 (+) True G230260
TU312293 lncRNA upstream 177313 25184812 ~ 25191943 (+) True G230249
TU312222 lncRNA upstream 570515 24795953 ~ 24798741 (+) True G230192
TU312111 lncRNA upstream 883739 24482310 ~ 24485517 (+) True G230109
TU311993 lncRNA upstream 1105191 24260059 ~ 24264065 (+) True G230011
TU312316 lncRNA downstream 2351 25376347 ~ 25377601 (+) True G230259
TU312409 lncRNA downstream 62155 25436151 ~ 25494197 (+) False G230327
TU312407 lncRNA downstream 101803 25475799 ~ 25494197 (+) False G230327
TU312410 lncRNA downstream 117787 25491783 ~ 25494355 (+) True G230327
TU312420 lncRNA downstream 121152 25495148 ~ 25495399 (+) True G230336
XM_039791863.1 mRNA upstream 19915 25263996 ~ 25349341 (+) False ttll12
XM_039791862.1 mRNA upstream 21703 25263996 ~ 25347553 (+) True ttll12
XM_039792326.1 mRNA upstream 108906 25244537 ~ 25260350 (+) True LOC120553672
XM_039792325.1 mRNA upstream 127318 25218540 ~ 25241938 (+) True pnpla3
XM_039792316.1 mRNA upstream 256063 25019376 ~ 25113193 (+) True mpped1
XM_039792050.1 mRNA downstream 18436 25392432 ~ 25400207 (+) True LOC120553526
XM_039792044.1 mRNA downstream 28359 25402355 ~ 25491732 (+) False LOC120553524
XM_039792041.1 mRNA downstream 28360 25402356 ~ 25491732 (+) True LOC120553524
XM_039792042.1 mRNA downstream 28360 25402356 ~ 25491732 (+) False LOC120553524
XM_039792043.1 mRNA downstream 28363 25402359 ~ 25491731 (+) False LOC120553524
TU312157 other upstream 590998 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1056318 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1481832 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1520632 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 664291 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 998740 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 998740 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1695081 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2229009 27603005 ~ 27603702 (+) True G230842

Expression Profile