RNA id: TU312456


Basic Information

Item Value
RNA id TU312456
length 4080
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G230367
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25490083 ~ 25494355 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgttttttattgaaataggCATAATAAATATCAGAACAAAGAAGTCAGTCCAACACAGGCATGACACTAGTAGTCCGTTGGCATTCTCGCCACGACCAGGATGCACAGTCACTGCTCTCATGGCCGTTTCCACTCGGGGTTAATACGACTCGTCACAGGACGCGTTTAGGGTTGTAACTTAAGCAAAGTGTGCAGTAGTCTACGGAGGAATGTCAATTCTATTCCACCAGAAATCTGCCCTGTAGCCATCAGCAAAGAGTTTGTTTACAACGAAATCCAGGACGAGACAGAGGACTCTGTTATTGTGCTTTGGAACTGTGGGTAGTCCTGCAGGGTGAGGCATTAGGGGGCACAGCAGCAAGAGAACACAgggttaaaaaaacacacacatgaaaaagAAATAGTGGTGACCAGTTATTCCACAGGCTTTATGAACCTTAAAATACCAGTGCTGCTGTCAGCCTGCAATGGAttaacattaaattaaaaaataaatatacgtGAAATCAAGACATTCCAAACTAACCATGACAGGCTGTGGGGTCCTTCACAGACTTAATACTGGAGACAGCGAAATACTACAGGGAACTGGGTTTGCAAAAGATGTCCACTTTTTCACGTTCCACGTTTCCTCAAAACTCATCTTCCATCCAGAATTCATTAGAGAGGGTCACGGTAAACACAGCTCCGTCTAAAGACAGCATGCACTAATGAGAATATTTACACCATCACAACGGATTCATTCAGACGGCGGTTAAGTAGCGACAGCGGCAAACATCTCTCATGCAGCACAAGTTATACgttgaaagaaaaataaatttgtCTGAAGAAAAATAGTCATTAGTTTCCACCCATCTCTTCTGTTTGGCTGCTGCTAAAGTAGAAACGATATGCAGATGGTGTTCCTCCCATAAAGCGGTCATGTTGCATTCATGTAATATGGGAACTAAAGGTTGACAGGTAGCTTGTAACATCACGCACTGATATCTAATGGATCAATTTAAAAAGGATAAGGctaatattctatatttttcataatgtcaacaaatcccattaaaAAGGCCTAAaccaacaatatacagtatgtccatGTGCCAACaataacacaagaaaaaaaaacatgtctaaGTGCAGTAAATGCCAACTTGTGAACCAACTGTGTATTAATCCaccgctgaaaatagtccccaacaaatgcactattctGTCCAGTTTGAGTGTAAAAGACTGATGTCTTTTGCAACAGACAGGGCAGGGAAGTCAGAACGTGGACGATGTGTTAAGTGCGACATGATGGCGCATTAGAATACTGAAATTAGATCAATGGAAGGATTCACTCGACATGTTTTTACAAGTAGACCAAACTGCAAGTGGCTGATTCACTCCAAACTCTCTACGGTTAACAGTTTTATTCCCCAGTGAtactacattcatttaaaaaaaaaatatattgcttGCTTGCGTAAAAGTTCCTTTTGTGACCTTGCAAATAGaaatttgacaaaataatcttaactcaaggtccacttttTTACACAATTCTGTTGAAAGCTCCGGAGAAAGCTAGTACGTGGACTTTGAATTcggtttatttaatttaacattttacacacacacgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagtgcgtctcactatctttgtggggaccgtcattgacataatgcattccctagccccttaccttaaccatcactagggttgggcatcgagaaccgattcctaatcggaatcgtttcaaaaattacgattccatcggaatcgtttctgttttggaatcgtttggaggatttggtttcaaatccgatcatcacttcccaatttaacatgcgcaagttttggtttccgtagtggccaggtgcttgttgtgttgcagccatggagcacagtaagcggcgctctagtgtggctttattttacgttgaaaaagctgtaaaactgcaaaccaccattgaatcaaaataaaactttcctcttatttgtgaaaataagcatgtgacccgtttcaactccacccctcaaagaatcggaatcgagaaccgataagaaccggaattgaaaggaagaatcggaattggaatcagaatcgttaaaatctaaacgatgcccaaccctaaccatcacaactgaatgcctaaccttatcccttaccctcaccctaaccataacctaattctatccctaatcctaaaaccaagtcttaaccctcaaacagccctttaatgttgtggggtccagcattttggccccacaaagctgtcgggaccccacaagtatactgtactcccagtttttggaccccacgaatgtagtttaagaagaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacggttcagTAGGAATGTCTATGAAGCCACAGGTTCCACGCCGACACGAGTCCAGCAGATTTAAAGACAGAGAGGCATGGAGAAATGGGGACTCCATAACACTGCACTGTGTGAAAGGATGTAGACGCAGAACAGAACTTCATCACCCTCTTCATCTTAACTCATCGTTCCAGTGTGTCACTGATCGCTCACAGTCTCTTCCTGAGGTCACATCACCGTCGACGTGCTAGCTAAAGCTAATCCTAACTAGAGCGTGAGGACGGCAGGCGAGGACAGGGAATCTACCAGTCTATCTAGATGCACCTACCGAAAGCAGGCGAGGCTACACAGCTAGCACACAGgaaaacatctgcagctgctgctaCTAAAATCTTAAAAGAAACACACTAGTGGTATTGCAATATTTCACCCCAGATAtcagtgtactgtatattactgtCAGCAATTTTCCAAGCATACTTAACATTTCTTAGTTGGATTTTCTTCCCTCCAAGCAGCCactgtttcagttcatttcactACGAAACATTAGCTTGCTcttattgtttttgttaaattatATTAGCATTACACGTTGGTGTAAGTCTggtgatattttatattgtccCCATGAAATAACCCAACCCAACAATGGATTGATCCTACTAACAAGTACGTGATacatcttcttcctctgtgccatagagctccgttgttgtccaaaaactattaaaacacaccagtgagccacactgttgccctgggtgacatgttccttcattacctgTACCACGAATACTCACCAGAGCACCAAATATGGATTCATTTCCTTTACTTTGAGTCATGTTTGATAAAACTACAGTGACAAGCTGTTTTTAAAGATGGACATCTTTGGTAGGAAATGGGCTTGGAGCTGAGAGCCAGAGTATGTAGTATCAGTAAGTATGGAGagactaacacattgttggtttgggTCTTTTCATGAACTTACtaagaaatatataaaatactaTGCTGGCTTACAGCAAGCTTTACGTTAGTCAGTAGTGAAACCAATGGCTGCCTGATGATGCAATAAACCTGAAACGAAGAGTATGTTCTAGAAATGTGTACACTGTAATGTCAAGTAATTGGGATTTACAGCATAGTtcatgaaataaaacacaattaaGCACTGGTTGTAATTGAATTAAAAAGGGTCTTTGGGGGTAATAATACTGCATCCTGAACCAAAGCCTCGCCTTCTCACACGAAGCGTGCCTTTGGTAACCAAACGTCTCTTCAGTTTTCATTACTCGACTCTCACTTCCTCCTTCCCTGGTCACGTGTCCAACCCCAGAGCCAATGGGCTTCAAGTGGAAGGGGTGGGGGAAGTTTTAGAGGAGAATGTAGAGTGGTCCCTCCGGGGGCTAAAGGTCAATGCCTTTGACCAGCGAGGCCTCCAGTGTGATGGGGAAGTCATGGATCGTCTCCAGGACTGCGATGAGGGCGCTGACAGTGGAGCGGTCTCGGAGCAGGGCCGTGTCCTCGTACATCCGCGAGATCAGCGGGCACTCCACCAGCAGGGGGAGCCACTGGGGCAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312387 lncRNA downstream 140979 25348711 ~ 25349104 (-) True G230318
TU312360 lncRNA downstream 244991 25240169 ~ 25245092 (-) True G230293
TU312346 lncRNA downstream 290774 25198818 ~ 25199309 (-) True G230281
TU312338 lncRNA downstream 410357 25079262 ~ 25079726 (-) False G230277
TU312458 lncRNA upstream 4005 25498188 ~ 25500209 (-) True G230368
TU312459 lncRNA upstream 17959 25512142 ~ 25512851 (-) True G230369
TU312461 lncRNA upstream 18743 25512926 ~ 25513571 (-) False G230370
TU312462 lncRNA upstream 18743 25512926 ~ 25513571 (-) True G230370
TU312483 lncRNA upstream 60932 25555115 ~ 25555314 (-) True G230386
XM_039792324.1 mRNA downstream 272390 25191261 ~ 25217693 (-) True sult4a1
XM_039792322.1 mRNA downstream 305612 25113999 ~ 25184471 (-) False LOC120553669
XM_039792354.1 mRNA upstream 8350 25502533 ~ 25524956 (-) True rint1
XM_039791988.1 mRNA upstream 63059 25557242 ~ 25567430 (-) True hspa14
XM_039791990.1 mRNA upstream 83280 25577463 ~ 25594098 (-) True irak3
XM_039791199.1 mRNA upstream 101395 25595578 ~ 25601380 (-) True LOC120553115
XM_039791201.1 mRNA upstream 109211 25603394 ~ 25606588 (-) False LOC120553116
XR_005638196.1 other downstream 272390 25191783 ~ 25217693 (-) False sult4a1
unassigned_transcript_1528 other downstream 913062 24576950 ~ 24577021 (-) True trnap-agg_20
TU311926 other downstream 1575391 23908556 ~ 23914692 (-) True G229950
TU311924 other downstream 1575391 23912101 ~ 23914692 (-) False G229950
TU311851 other downstream 1789885 23699697 ~ 23700198 (-) True G229907
TU312561 other upstream 101397 25595580 ~ 25601366 (-) False LOC120553115
TU312668 other upstream 686368 26180551 ~ 26196487 (-) False mkrn1
TU312734 other upstream 881509 26375692 ~ 26381365 (-) True G230594
unassigned_transcript_1529 other upstream 1506869 27001052 ~ 27001123 (-) True trnaw-cca_36
TU312888 other upstream 1623023 27117206 ~ 27118597 (-) True G230730

Expression Profile