RNA id: TU312505


Basic Information

Item Value
RNA id TU312505
length 2956
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G230401
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25595592 ~ 25616671 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTTATTACCCAACCATATTGTATAGGATACATTCTGACATTCTGAGCCTAACATGTCAATATTCATCAACTGAGATCTACATAAATAAGTGCTCAGGTTTGGGAGTCCTTCTGCATAATGAACTGGAAAATAATAAGCTTAATATTTCAGAAGATAAAATGGTGCACAAGATAATTAAAAAAGCAATTTCATGTATATTCAAATGATTAAGAAGAGTTATGATTAAAATATTTTAGCCATTACAGATTAAGCATTAAAAACACAGAATGCAAACACTTACATGTCCAATCACTAAAGGCTTCCTTAAAGCTCCATTAAGCAGTACAATGGTAAAGTTGGTTGTGGGCTCAAAGCTGACTGGATGCCAACATCAATCATTCAATTTAACTAAAAACTGATTTCATATTTTGTTCATGCACATTATTTTGGAGAGATAAACCGAATGGACAGGTATGTATTGTATTTATCTTTGTGATCACTTACCCTCcaccttatttattattattattattattattattatttattgatctGTTCCTGTGTGGCTACACACTAACAGGCACATCTAGTGGTTCAACTACTACTTAATGGAGCTTTATTGCCATTTGCTATTTCTGGTATAAAAACATACAGAGAAGTTGAAGTGCAATTGTTTCTGACATTTTCATGATGCTCAAACTTTCACGATAAAACCCCAAGGTTACAGATAGTCAATTAATCTTCTTCATCTTCCTGATACTGAGCACACCTGTGGTCATCAAACAAAAGGGTTAGAAACAGTGTCACTTGTTTACcgaatttaaaaatgacatttagAATGAATATGGGTACACACCTGGAGCAAGGCCGAGCGTAGAGCTTACATATCTGACTCTgtagagagaaacaaaaacatgttaaaaacaaTATCCGCGGACTCCTGCGTTTGCAGATTTCGCGTGGTCTTGCTTATCTGGGGCACGTCCAATCTCTAAACGGCACGCGCCGTTTTCCTACGGCGTCCGTGTGGAGCGACATGTTTCCTCGGAACGGTGTGAAAAAAGTATCCCTCTTAGAAACTGTTgtttacactgtaaaaaattgCAATTACTTGTATTAGTTTTTTGTACACTTATTTTATATGAAACTTTGGAACTCTAATACTGAAAGCGTACTGGTGATTTTGTATCTTGACAGTTTACATTTGGTTTTTATATAAGCCATTACAGGCTCTACCACATCCTcacatgtattttatatttcttcaatgtgatttgtatttgtgtgtgaaacAAATACACATCAACTATAGTATATTAATGTAGTTTCATAGTGCAATTTAGAGAATGTTGTATAGAAGtggttctcaaatgggggtccgtGTCCCcccagggggtacgtgtccccctaggggtactctggaggactgcagggggtacatgtccccctaggggtactttggaggactgcagggggtacgtgacattttttgctaaatgtttttcagttccaaggcaTTAGTTACttctgctgtcttttttttctcctagtttgtcgcttttttcaaagtttttgtctctgtttctgaagtttgtcacctttttctgaAGGTCTTGTCgtttgttttgacctattcttgcctttcttccttactttgttctgctttctttttttcttgtaagtttttgtcacttttttcagtctgtcacttatttgaattttttgtcacttttgtcacccTAGTGtcgccttccttctttctactttttttttttcgaagttattattactattttcgacctattcttgccttacttcctttcTACCTTCTTTTCCAAGGTTTgtcgttttttattttaatttttttacagtttttgtgtccTTTTCTCATCATCATTTAAATATGTTCCAGGTCCAAGTAAATAgattagtaaatctatcgctgacatcgctgtattcttcctctttatagagactttgttttttctaccaaaaatagttcgcgctggtcagggggtacatggcttaaaaacactgttcaaaggGGGGGAACATTGTTGAAAAAAGCTGGAGAACCACTGGTGTAGAGTGTAGTGTTATGTGTAAATCCTTTctcgtcttttttttcttattctaaATGAGTATACTCTGACTGTAAACCTAATACTGTAATTAATGGGGGTAGACAgtagacagagaaagaaaaacaaaacaaaacagagagacagacacataccCCAGACGTATGTTTGGGTCTTTCCCATGTGAGTCACTTTGCAGGCAAAATTGTCTTCGCTCTTTGGGGTAAAGGGCACATGTTTGGTTAGGTGGTAGTGCCAGTTCTCCTCGAAGGCCAGGTCGGTCTGCTGGGATCCTGGCAGTTCCTGTTGGTTCTTGAGCAGTTGGATGGTGATCTCTGGTGGGTGGAAGCCGCTCACGTGACAGATGAGGGTGTTGACTTTATCAAAGTGTCCCGGTTCCCGGCTGTAAACCTGGACCTTGGGCGGCGCATTCTTTGGCTGTtgaaggacagagacagagcagaCCGACGAGAAGTGCGCAGACAAATGTCTTCATGATTTTACCTTCAGTTGGTCTCCGTAACGTTACAGAAAAGTGTCGTATCGTCAAATAAAGCTGCCCCGCGAGCCAAAACGaaagtaaatgtgttttttattcgGGAGTTCTTTCTGTTAAACGGCGGGGACGCTGTCGGCTGTCGGTCCGGTCGAAATGACTAAAAGTGCTTCCGGGAGGTTTTCCACTTCCTCCACCAATAGAATAATCCAGATGAAGTGTTGCTAGGTAGATTTTACTACGAGATGTTGCCCTGTGTGGCGCAGTTCttttctgtcaaataaataaaccctCCATGTTTGTTTGAGCTGCCTACGAGTTGCTAGCTAGTCTATGGTTGCTAGTCGCCATAGTTGATATGTTTTGTGATATCTTTTATTCCTCACACACAAAGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312423 lncRNA upstream 91156 25503664 ~ 25504436 (+) True G230339
TU312421 lncRNA upstream 95383 25499847 ~ 25500209 (+) True G230337
TU312420 lncRNA upstream 100193 25495148 ~ 25495399 (+) True G230336
TU312410 lncRNA upstream 101237 25491783 ~ 25494355 (+) True G230327
TU312407 lncRNA upstream 101395 25475799 ~ 25494197 (+) False G230327
TU312510 lncRNA downstream 16588 25618202 ~ 25619259 (+) True G230404
TU312512 lncRNA downstream 40307 25641921 ~ 25662819 (+) False msrb3
TU312516 lncRNA downstream 49044 25650658 ~ 25952405 (+) True G230406
TU312529 lncRNA downstream 120039 25721653 ~ 25722486 (+) True G230415
TU312540 lncRNA downstream 175397 25777011 ~ 25777634 (+) True G230417
XM_039791989.1 mRNA upstream 21570 25568539 ~ 25574022 (+) True cdnf
XM_039791084.1 mRNA upstream 42591 25546940 ~ 25553001 (+) True prl2
XM_039792048.1 mRNA upstream 103861 25402417 ~ 25491731 (+) False LOC120553524
XM_039791198.1 mRNA downstream 6892 25608506 ~ 25614445 (+) True tmbim4
XM_039791311.1 mRNA downstream 19829 25621443 ~ 25640090 (+) True lemd3
XM_039791312.1 mRNA downstream 19829 25621443 ~ 25640090 (+) False lemd3
XM_039791313.1 mRNA downstream 19829 25621443 ~ 25640090 (+) False lemd3
XM_039791320.1 mRNA downstream 40226 25641840 ~ 25662736 (+) False msrb3
TU312157 other upstream 817334 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1282654 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1708168 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1746968 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 436673 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 771122 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 771122 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1467463 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2001391 27603005 ~ 27603702 (+) True G230842

Expression Profile