RNA id: XM_039791318.1


Basic Information

Item Value
RNA id XM_039791318.1
length 1541
RNA type mRNA
GC content 0.47
exon number 7
gene id msrb3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25641840 ~ 25662819 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATTGTTGAAGAAGACGTTGTAGTCCGGTTACATCATGCTGTGACGAGGCTAGGGTCCTGTCCATAATTGGAGATGTTGAGGCACTCCAaccgtacacaaacacacagtctgtCGGTCAACGGGAAGGCTGTGGTGGGTTAGCCTTGGTGGGTTAGCCTTGGACACCTGCAGATTAACACTGGCGACACAACGCTTCTCTGTCACCGCTGCTTTCCTGTTGCTGCTCTTCTCAGCCTAGTCCTTGGTTGTAGCCCTGCTGTGAAGTGTTTGGTTCTACTGGTGGGAGGAGCACCTCTCTCCAGCAGCCATGTCGGGCTTCAATCTCCTGCATCTAATAACCAAGAGCCAGCCTGTAGCTCTGAGGCCCTGCAGTCTTCCCTCAGGAGCATGTAGGACTAAGAAGACCTGGCCAGTGAGCTTCCCtcaggaggagctgaagaagcgGCTCACACCTACGCAGTACCATGTTACCCAGGAGAGAGGAACGGAGAGTGCCTTCACTGGAGGGTTCACCCATCATAAAGATGAGGGGACCTACACTTGTGTTGTCTGCGGGGCCCTGCTGTTCagCTCCAACACTAAATTTGACTCGGGATCGGGTTGGCCGTCCTTCTTTGACCTTGTGAAGGAAGAGTCCGTCACAGTCTCAGATGATTTCTCCTATGGGATGCACAGAGTGGAGATCACCTGCAGCCAGTGTGGAGCTCACCTGGGACACCTGTTTGATGACGGACCGAGACCCACAGGAAAACGCTACTGCGTCAACTCGGCCTCGTTGGGTTTCCAGCCCAATGGCGCCCCCTCCTCCACTGCCAGCTCTGCGGCAGAGAACGGAGCTGCCAGCAGCTCAGCGAGCAACGGGAAGACAGAGCTCTGAAAGAGACTCATGAGCTGCAGCAGGCTGACAGCTGTGCCTGTGTAGGGAGagctcacatacataaaaagaGTTTTTGGTTCTGTGTTATTGATTTGCAATGTAAAGATAGTAGGTGGTTCTATTATTACGAAAGGAAGGAAGTTGCTCAGGCTTTAGACTCAGAAATACTCTGATGTATTCTCTATCACAAAGGAAAGGACACGCTTCCAAAAAAAGTCCCAGTTTGCAAGACACACTGTATCTGCTGATTGCCTTAAAAGGAATTCCCTAATTCCCTTTATTTTCTCAGTCTGTACAGTAGCATTTGGTCTGCTAATTTAAACATGGATGAAGTGCTGTGTAATAGTAgacgcacacacgcatataAAATGtagagcctttttttttatattctaactaaaacatattttattggAGTATATTTTTGAAGTGAATTTGATACTGAGAGGTTGATGTAATGAAACTGTCTATGCAAGTCCTCCTGTGAGCTGTAACAGAGCATACTGTGACAGATAGCATCTTAAAGTGGACAATTGGAGTACTGTAGTCCTTAGGTCACTTCCTGTATTTATTCCTCTTTGCAGTAGGaaatattttgagtttgtgtttacagcttgcaTTAAAATAGTTACTGTGTGAATAAAGTATCTAGAAAACCCTGA

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030091 protein repair biological_process
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function

KEGG:

id description
K07305 msrB; peptide-methionine (R)-S-oxide reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312510 lncRNA upstream 22582 25618202 ~ 25619259 (+) True G230404
TU312507 lncRNA upstream 25170 25595592 ~ 25616671 (+) True G230401
TU312504 lncRNA upstream 34991 25595592 ~ 25606850 (+) False G230401
TU312505 lncRNA upstream 40227 25595592 ~ 25601614 (+) False G230401
TU312423 lncRNA upstream 137405 25503664 ~ 25504436 (+) True G230339
TU312529 lncRNA downstream 58917 25721653 ~ 25722486 (+) True G230415
TU312540 lncRNA downstream 114275 25777011 ~ 25777634 (+) True G230417
TU312543 lncRNA downstream 125870 25788606 ~ 25789256 (+) True G230418
XR_005638198.1 lncRNA downstream 135253 25797989 ~ 25801309 (+) True LOC120553708
TU312545 lncRNA downstream 147714 25810450 ~ 25812817 (+) False LOC120553706
XM_039791311.1 mRNA upstream 1751 25621443 ~ 25640090 (+) True lemd3
XM_039791312.1 mRNA upstream 1751 25621443 ~ 25640090 (+) False lemd3
XM_039791313.1 mRNA upstream 1751 25621443 ~ 25640090 (+) False lemd3
XM_039791198.1 mRNA upstream 27396 25608506 ~ 25614445 (+) True tmbim4
XM_039791989.1 mRNA upstream 67819 25568539 ~ 25574022 (+) True cdnf
XM_039792422.1 mRNA downstream 33145 25695881 ~ 25753815 (+) True hmga2
XM_039792423.1 mRNA downstream 33145 25695881 ~ 25753815 (+) False hmga2
XM_039792221.1 mRNA downstream 106001 25768737 ~ 25779615 (+) True dera
XM_039792399.1 mRNA downstream 147671 25810407 ~ 25812828 (+) True LOC120553706
XM_039792454.1 mRNA downstream 375452 26038188 ~ 26106823 (+) True arhgef39
TU312157 other upstream 863583 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1328903 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1754417 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1793217 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 375551 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 710000 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 710000 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1406341 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1940269 27603005 ~ 27603702 (+) True G230842

Expression Profile