RNA id: XM_039792399.1


Basic Information

Item Value
RNA id XM_039792399.1
length 728
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120553706
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25810407 ~ 25812828 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTTGCAGTTGTCCCGCCTCCTGAAATTCCGGGTGAAGGGTCAGTTTGTTTTTATGCAACAGACCCAGACTTCACTCCACTTCTGTAGAGTCACCACAGAACTTGTAAACCAGCAGAGATGGCAACGCTGATGGAAGATGAGGTATTTATGGCTTTCACCACCTACGCAGCTATTGTCATTGTGAAGATGTTGCTGATGGCGCCCATGACTGCATACTACCGCATGACCAGAGGGGCTTTCGCGAACGAGGAAGATGTGGCCCTGAAGcctgaagaggagaggaagaagctgTTGAGAACCCATCCAGATGTGGAGCGAGTTCGAAGGTGTCACCAGAATGACCTGGAGAGCGTTGTTCCCTTTGTGATGGTCGGCCTGCTCTACGCGCTGACTGGACCCGAGCTTTCTACTGCTCTGCTTCACTTCCGTGTGTTTGCCGGCTCTCGGATCTTCCACACCATCTCGTACGTTGGCGCTCTGCCTCAGCCCAGCAGGGCCCTGTCCTGGGTAGCAGGCATGCTGGTCACCTTCTCCATGACTTACAGGGTGCTTAGCACCGTTCTCCTCCTTTAGAGACAGCATTGGACTCTAACAAAACCTTATctgttaattaataattaactcTTGCTGCAGCTATCTATGAGCTTGATTATTAAACATCCTTAGCACTTATGCTTTACATTTTCATAGATggaacatttctttttaataaacttttCTATCAAC

Function

GO: NA

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638198.1 lncRNA upstream 9098 25797989 ~ 25801309 (+) True LOC120553708
TU312543 lncRNA upstream 21151 25788606 ~ 25789256 (+) True G230418
TU312540 lncRNA upstream 32773 25777011 ~ 25777634 (+) True G230417
TU312529 lncRNA upstream 87921 25721653 ~ 25722486 (+) True G230415
TU312512 lncRNA upstream 147588 25641921 ~ 25662819 (+) False msrb3
TU312624 lncRNA downstream 242695 26055523 ~ 26055735 (+) True G230488
TU312646 lncRNA downstream 313204 26126032 ~ 26126398 (+) True G230510
TU312656 lncRNA downstream 358560 26171388 ~ 26173594 (+) True G230520
TU312657 lncRNA downstream 360818 26173646 ~ 26174741 (+) True G230521
TU312661 lncRNA downstream 366715 26179543 ~ 26180016 (+) True G230525
XM_039792221.1 mRNA upstream 30792 25768737 ~ 25779615 (+) True dera
XM_039792422.1 mRNA upstream 56592 25695881 ~ 25753815 (+) True hmga2
XM_039792423.1 mRNA upstream 56592 25695881 ~ 25753815 (+) False hmga2
XM_039791315.1 mRNA upstream 147671 25649437 ~ 25662736 (+) False msrb3
XM_039792454.1 mRNA downstream 225360 26038188 ~ 26106823 (+) True arhgef39
XM_039792286.1 mRNA downstream 333079 26145907 ~ 26158913 (+) True il17ra1a
XM_039791358.1 mRNA downstream 403313 26216141 ~ 26219357 (+) True LOC120553199
XM_039791361.1 mRNA downstream 409961 26222789 ~ 26253935 (+) True cnot4b
XM_039791362.1 mRNA downstream 409961 26222789 ~ 26253935 (+) False cnot4b
TU312157 other upstream 1032149 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1497469 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1922983 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1961783 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 225459 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 559908 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 559908 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1256249 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1790177 27603005 ~ 27603702 (+) True G230842

Expression Profile