RNA id: TU312624



Basic Information


Item Value
RNA id TU312624
length 213
lncRNA type intronic
GC content 0.44
exon number 1
gene id G230488
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26055523 ~ 26055735 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cttaaaatgttttcagaaacatgtttcagtgaactattttagtacaatatgagatcgtattctgaacggccgccatgacagtctggctctcaatatccggagaaaacaaacccatgtgacgcgttcgtccaatcagctgccggttttcattacttgggcaacaatacagagtagcgccgcctgctgttatgtagacgtattacgtttctcagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312516 lncRNA upstream 103118 25650658 ~ 25952405 (+) True G230406
TU312545 lncRNA upstream 242706 25810450 ~ 25812817 (+) False LOC120553706
XR_005638198.1 lncRNA upstream 254214 25797989 ~ 25801309 (+) True LOC120553708
TU312543 lncRNA upstream 266267 25788606 ~ 25789256 (+) True G230418
TU312540 lncRNA upstream 277889 25777011 ~ 25777634 (+) True G230417
TU312646 lncRNA downstream 70297 26126032 ~ 26126398 (+) True G230510
TU312656 lncRNA downstream 115653 26171388 ~ 26173594 (+) True G230520
TU312657 lncRNA downstream 117911 26173646 ~ 26174741 (+) True G230521
TU312661 lncRNA downstream 123808 26179543 ~ 26180016 (+) True G230525
TU312693 lncRNA downstream 144512 26200247 ~ 26201227 (+) True G230555
XM_039792399.1 mRNA upstream 242695 25810407 ~ 25812828 (+) True LOC120553706
XM_039792221.1 mRNA upstream 275908 25768737 ~ 25779615 (+) True dera
XM_039792422.1 mRNA upstream 301708 25695881 ~ 25753815 (+) True hmga2
XM_039792423.1 mRNA upstream 301708 25695881 ~ 25753815 (+) False hmga2
XM_039791319.1 mRNA upstream 392787 25649568 ~ 25662736 (+) False msrb3
XM_039792286.1 mRNA downstream 90172 26145907 ~ 26158913 (+) True il17ra1a
XM_039791358.1 mRNA downstream 160406 26216141 ~ 26219357 (+) True LOC120553199
XM_039791361.1 mRNA downstream 167054 26222789 ~ 26253935 (+) True cnot4b
XM_039791362.1 mRNA downstream 167054 26222789 ~ 26253935 (+) False cnot4b
XM_039791359.1 mRNA downstream 167055 26222790 ~ 26253935 (+) False cnot4b
TU312620 other upstream 8842 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1277265 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1742585 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 2168099 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 2206899 23833031 ~ 23848624 (+) False adm2a
TU312731 other downstream 317001 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 317001 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1013342 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1547270 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 1885586 27941321 ~ 27947473 (+) True G230904

Expression Profile