RNA id: TU312657


Basic Information

Item Value
RNA id TU312657
length 1096
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G230521
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26173646 ~ 26174741 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGGGACCAGTGTTGGAATAGAATACATACgcagaatacactttattgtccccgaggtGGAAGTTTGTCTTGGGCATAGTGCTAcaatctgttgcttcacaacacaaacatgacaGAGAAACCGTTCTAAAATCAACACAGAGTCtacataaaaacacagacataaGATCAACGGAGCAGCTTAGGACATAAAGGAAGGACACAATATGACTGTACAGACAATACCACATCTTAAACAGTGACTGTAATAATCAATGTGCTACGTGCATATTACGTacgagaattaaaacgacaacacGACAGGCAAacaccaaagttaatattggagtggctagaacagctgcgtggaaacgatggagatactaagagatcATTTCTAATGGGGAGGGGTTAGAAactaatattcagttggttgacatatacaatttcaccgctagatgggagaaattcttacacaatgtagcttgaagtagaattttcacgtatctgtactctacttcattatttatttttctcttactccactacatgtcCCCTAAGCATTCGTTACTACTAATAAATTCTGAATAAATTTGTTACACTGGATAAAAAGCAGGTTTGGTGAATTATGGCTCCTAGTTAATGCACACTTCATTCCAGTTGGTGACCGAATGCCTAAAAAAGAAAACCCAACCAtaggccaaaactaaagaagaagaggaggacgcACAATAACTGATGGGgtcatggaagcacctggtGCAGGCTCTGCCACCATGGTAACAGACGATGGTCACCCCGACGACAGTGGTGAACAgggtggtgatgaagataacggtacacacctttggccataCAGTTCATAATGaaagtttgttttggtttttttactTCTACTTCTAATAATGAAGtacatttaaaggggtgatagaatgattatatagggtatttcacactgttccttatggtctcctaatgggctatgtaacattggttgggctgaaaatggcctggttgatattttattggcccttatgcatccctgtgttttggccctatttgtaacaagagcttttcttccaaatatggtatggtcatgaatatttagatgagctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312656 lncRNA upstream 52 26171388 ~ 26173594 (+) True G230520
TU312646 lncRNA upstream 47248 26126032 ~ 26126398 (+) True G230510
TU312624 lncRNA upstream 117911 26055523 ~ 26055735 (+) True G230488
TU312545 lncRNA upstream 360829 25810450 ~ 25812817 (+) False LOC120553706
XR_005638198.1 lncRNA upstream 372337 25797989 ~ 25801309 (+) True LOC120553708
TU312661 lncRNA downstream 4802 26179543 ~ 26180016 (+) True G230525
TU312693 lncRNA downstream 25506 26200247 ~ 26201227 (+) True G230555
TU312701 lncRNA downstream 84184 26258925 ~ 26259131 (+) True G230563
TU312737 lncRNA downstream 207950 26382691 ~ 26383656 (+) True G230597
TU312745 lncRNA downstream 207950 26382691 ~ 26383656 (+) False G230597
XM_039792286.1 mRNA upstream 14733 26145907 ~ 26158913 (+) True il17ra1a
XM_039792454.1 mRNA upstream 66823 26038188 ~ 26106823 (+) True arhgef39
XM_039792399.1 mRNA upstream 360818 25810407 ~ 25812828 (+) True LOC120553706
XM_039792221.1 mRNA upstream 394031 25768737 ~ 25779615 (+) True dera
XM_039792423.1 mRNA upstream 419831 25695881 ~ 25753815 (+) False hmga2
XM_039791358.1 mRNA downstream 41400 26216141 ~ 26219357 (+) True LOC120553199
XM_039791361.1 mRNA downstream 48048 26222789 ~ 26253935 (+) True cnot4b
XM_039791362.1 mRNA downstream 48048 26222789 ~ 26253935 (+) False cnot4b
XM_039791359.1 mRNA downstream 48049 26222790 ~ 26253935 (+) False cnot4b
XM_039792387.1 mRNA downstream 197973 26372714 ~ 26379857 (+) False mrps33
TU312620 other upstream 126965 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1395388 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1860708 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 2286222 23887337 ~ 23887424 (+) True trnay-gua_62
TU311876 other upstream 2325022 23833031 ~ 23848624 (+) False adm2a
TU312731 other downstream 197995 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 197995 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 894336 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1428264 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 1766580 27941321 ~ 27947473 (+) True G230904

Expression Profile