RNA id: TU312669


Basic Information

Item Value
RNA id TU312669
length 1844
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G230533
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26163958 ~ 26165801 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGATCCTCCTTTCTCAGAGTGTGTGTAGACGTTTACATAGTGATGAGGTGAAATGTGCATCCAGGTGCTGCTGGGTGATTCCAGATTCCAGACAGTGTTAACAGCAGTCTGAACGACAGCATATCATGGCATGACCACTGTCCTCCATCAGCTTTTCAGTAACGTTGTGTCTCGTAAACATGGCTGGTCAAAGTATATTAGATAAGTATATAAAGAAGATGTATAGTGAAGACATTGTGCAATAGGGGTCAGAGGGGTCTGAACTTATTTTAGTGCCTATTATTTTAGAGCTGACTGAACTCGGTGCATTGCGGTGTATAGTGCATGCAGGTCAGAGGTTGTGCCTTTCTGAGCAGTGGGGGGGGGACTGCTGAGGCTCGGACTGACGAGGAGCATAAAGGAGCGTACCCGAGTTAAGATTAGGGATTAATAGCCTGGATGTCCTGGATCTATTGTAAAGGTCAGAACTGTGTAGCTCCCATTAGAGAAACACGGGTCCATTATTGTACATTTGGCTAACATCCTTGAAGGGTCCTGACGCAACAAATTGCTAAACAATCCTAAGTCTTGCTGCATTTGTTGCATATTGTTTTTCCTTATTTCTGAATCTAAAACGGTGACATGCAGCTGATACAGGTCAGGCTGTCGCCGTCTTGTCTCTTAATAATGTCCcactgcagactgatctcatgaagtggcgtatgtatgacacgccaattcgtatgccattttggcgtgttatcaacaCGCATAATGTCTCTCCAGAAAAAATGTGAtcatgcaatcgcataattcaatgcaaaatcagccaaagtccgcatatttatgtgggggctacattttttaaaatacgctgcactttcgccgcataaattgccgatttccgcgcaaaatatgcggggcttgcatgatttcataatctccgcatttttgttgcaaaaaagtcacatatatcttagcagaaagttgaaaaatgttgcgtttacttcacacaagagcagccatttcccctgttgggaacgttatgaagtgatgtaattacgcaacgtgaacgTCATCAAGTCagtcccgcaatttcatcgcataaaattgcataaatatcccgcatattccatcgcattttttaagaaaacgtgccgcataatcaaggatttttgcccgcaacaatcacaaaaaaactctggaagGACTAATACtggctttttagcgtgtttatcaacgccgtttggcctccattgacttacattaccttgtgtTTGCGTGGCAATTTacaccgtagcgagtagtatgaaagggtgaaaatccacccaggagaccggggatcgggtcccgcgtgtcacgtttcctaaacccaaccgtagctttcttcttttcctaaacccaactgtccgaaaagtgattatgcgtcttgataacgcgCCAAGATGGcatggcgtgtcatacatacgccacttattgagatcagtctgcaaccCGTCCGCTGGATACGGCGTAGACATACATTCATAGGATAGCTGAAAacgcgtacagataacacgccacttggctttagaaagtgggcgtgtatgtttacgtgaagtcatgatgtcattgCCATCTTTCACTTTCAAACCGCTAACCATGTGGCTAACATGCGTCTAGCTGCGTCTCTAATGAACTCCAGACAGCTGTCACCGTGCCACCTGAAGGTCAGCTCTGAGTGGAGCATTGTGGGAAATAAAAAAGGTTCAGTCAATTTAGCTGTAGGCAAGGCAGTGGATTGTTTATTCCTAATAATTGATAGGAATGATCATAATTATTGAGAACAATGAAATAGTTTGACTCTGAATCGCAATGTCAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312685 lncRNA downstream 1006 26161491 ~ 26162952 (-) True G230548
TU312677 lncRNA downstream 37557 26126033 ~ 26126401 (-) True G230541
XR_005638185.1 lncRNA downstream 473225 25688277 ~ 25690733 (-) True LOC120553546
TU312581 lncRNA downstream 513385 25641794 ~ 25650573 (-) True G230450
TU312568 lncRNA downstream 545514 25618178 ~ 25618444 (-) True G230440
TU312688 lncRNA upstream 1540 26167341 ~ 26168381 (-) True G230550
TU312666 lncRNA upstream 5519 26171320 ~ 26173275 (-) False mkrn1
TU312690 lncRNA upstream 8997 26174798 ~ 26175173 (-) True G230552
TU312692 lncRNA upstream 13317 26179118 ~ 26179389 (-) False mkrn1
TU312695 lncRNA upstream 43313 26209114 ~ 26209340 (-) True G230557
XM_039791192.1 mRNA downstream 23924 26128814 ~ 26140034 (-) False LOC120553108
XM_039791194.1 mRNA downstream 23978 26128814 ~ 26139980 (-) False LOC120553108
XM_039791193.1 mRNA downstream 23980 26128814 ~ 26139978 (-) False LOC120553108
XM_039791191.1 mRNA downstream 23981 26128814 ~ 26139977 (-) True LOC120553108
XM_039792058.1 mRNA downstream 43640 26113800 ~ 26120318 (-) True rergla
XM_039791793.1 mRNA upstream 3308 26169109 ~ 26171253 (-) True tmem121b
XM_039791794.1 mRNA upstream 5802 26171603 ~ 26196510 (-) True mkrn1
XM_039792439.1 mRNA upstream 95824 26261625 ~ 26363900 (-) False tmem178b
XM_039792438.1 mRNA upstream 96005 26261806 ~ 26364669 (-) True tmem178b
XM_039791350.1 mRNA upstream 885470 27051271 ~ 27165117 (-) True cog5
TU312561 other downstream 562592 25595580 ~ 25601366 (-) False LOC120553115
XR_005638196.1 other downstream 946265 25191783 ~ 25217693 (-) False sult4a1
unassigned_transcript_1528 other downstream 1586937 24576950 ~ 24577021 (-) True trnap-agg_20
TU311926 other downstream 2249266 23908556 ~ 23914692 (-) True G229950
TU312668 other upstream 14750 26180551 ~ 26196487 (-) False mkrn1
TU312734 other upstream 209891 26375692 ~ 26381365 (-) True G230594
unassigned_transcript_1529 other upstream 835251 27001052 ~ 27001123 (-) True trnaw-cca_36
TU312888 other upstream 951405 27117206 ~ 27118597 (-) True G230730
XR_005638254.1 other upstream 1598593 27764394 ~ 27764592 (-) True LOC120553860

Expression Profile