RNA id: TU312701


Basic Information

Item Value
RNA id TU312701
length 207
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G230563
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26258925 ~ 26259131 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtctgagctccaattattaaatactgccatggtattctcttcctctactttgtggaatatgcaggtcattaactgcatatggaccaaaaaaaactgatggggtcagaggtgcttgcaactgatggtttcgagtgggggggggggtatagcTAGGCGCAACGAGGGAGCAAATACCATTGCAgcattgaataattggagcacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312693 lncRNA upstream 57698 26200247 ~ 26201227 (+) True G230555
TU312661 lncRNA upstream 78909 26179543 ~ 26180016 (+) True G230525
TU312657 lncRNA upstream 84184 26173646 ~ 26174741 (+) True G230521
TU312656 lncRNA upstream 85331 26171388 ~ 26173594 (+) True G230520
TU312646 lncRNA upstream 132527 26126032 ~ 26126398 (+) True G230510
TU312737 lncRNA downstream 123560 26382691 ~ 26383656 (+) True G230597
TU312745 lncRNA downstream 123560 26382691 ~ 26383656 (+) False G230597
TU312754 lncRNA downstream 132507 26391638 ~ 26392178 (+) True G230604
TU312750 lncRNA downstream 169303 26428434 ~ 26432122 (+) True G230600
TU312785 lncRNA downstream 354821 26613952 ~ 26614172 (+) True G230635
XM_039791361.1 mRNA upstream 4990 26222789 ~ 26253935 (+) True cnot4b
XM_039791362.1 mRNA upstream 4990 26222789 ~ 26253935 (+) False cnot4b
XM_039791359.1 mRNA upstream 4990 26222790 ~ 26253935 (+) False cnot4b
XM_039791358.1 mRNA upstream 39568 26216141 ~ 26219357 (+) True LOC120553199
XM_039792286.1 mRNA upstream 100012 26145907 ~ 26158913 (+) True il17ra1a
XM_039792387.1 mRNA downstream 113583 26372714 ~ 26379857 (+) False mrps33
XM_039792386.1 mRNA downstream 113584 26372715 ~ 26379857 (+) False mrps33
XM_039792384.1 mRNA downstream 115074 26374205 ~ 26379857 (+) False mrps33
XM_039792385.1 mRNA downstream 115080 26374211 ~ 26379857 (+) False mrps33
XM_039792278.1 mRNA downstream 127684 26386815 ~ 26427044 (+) True braf
TU312620 other upstream 212244 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1480667 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1945987 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 2371501 23887337 ~ 23887424 (+) True trnay-gua_62
TU311876 other upstream 2410301 23833031 ~ 23848624 (+) False adm2a
TU312731 other downstream 113605 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 113605 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 809946 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1343874 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 1682190 27941321 ~ 27947473 (+) True G230904

Expression Profile