RNA id: TU312731


Basic Information

Item Value
RNA id TU312731
length 1994
RNA type TUCP
GC content 0.42
exon number 3
gene id mrps33
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26372714 ~ 26381109 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAAAGTGTCATGCGCGATACCGCTTGTGATGGTAGTATGGCGTGTGTGAAGGTTAACGTTAGTTAAAACGTTAGTACACTTAACTATACTTGTAATTTAACTCGGTTTTCAGTGTGTTTTGCTCACGTGTATAGGGTGTCCCGCTGAACGACGGTGTGTACTTCCTCACAGGCTAACTGTCGCAGGAAGGCATGGCGGGTCTGTCCAGCTACGCCGTGCGCATGGCCAGACTGAGCGCGCAGATCTTCGGGGGGGTCGTGCGTCCGACAGACTCCAGGTCCATGAAGGTGGTCCAGCTGTTCCAGGAGCCCCCCATGGCCCAGAGGAAGGAGGTGTACGACTGGTACCCACAGCACAAGATTTACTACTCCATGACCCAGAAGCTCCGCTTCATGGGACTGTTCAGAGACGAGCATGAAGACTTCAAGGAGGAGATGCGTCGCCTGAGGAAACTGCGAGGAAAAGGGAAACCAAAGAAAGGAGAAGGGAAGAGAGCGGGGAAGAAGAAATGAGCTGTTTTTCTCCCCCTTCTTTTTCTGGAAGCAGACAGCATTGGACTGTGAACATGCTGTCTGTGGACATGGCTGATCATCCCGAAAGAATTCCATTGGTTTGGTCAGGACTGTACAGTTCAGTGTTGTTCCTTTGTTGGAAGCGTTTTTGTGTTGGCAAGAGTAATAGCTTAGGTCAGCGTTTCACATGAGACATTCTCTGTCAGTTGTATTGAAGTCAATTCCATCCTTTttattgatgattattgttCCATCTCTTGCATtcaaagggtaactaccgttcttttcaacctggaccctattctcctatgtttttgtgtctaagtgactgataggaacaacaatctttgacatcggtccagtattaagagagatcgctgcagtcggcagtggagaaacaagctacaatctaagttaataggacaattgtccagcttgttttTACCATCAGAAATgggcttgttttgccgctgacagacttagattattattctaagtgtctgacaacattatagaaaggatccctacagagagagacctttaaacctctttgagacctttctgtttaaccagaaacagctctgaggtcgctagcgctaaaccctccagactgcatgtaaaaaaaaaaaaacccgtacttttagcgtgtatagagccaacatattttcacatgtaaatctgtaaactatgtgtttatttcaaccaaaactagagttgtgatggttggaaaagtggaaagacgacccaaaacagattttaatagttttattctgttgactttgaatgaagtgtattttacgatgctaaaatgactgtttatttacatggagtctggtgggtttagcgaacgcaatttcgcggatgttttcgtgtttaaaaaaaggatcttaatctttaacagaaaggtcgacctccttagaaatcctttccataatgttgtcagacacttagaatattaatctgagtctgtcaacAAGCTGCACaactgccctattaacttacattgtagtttGTTTCACTGCTACCGAttgcagcgatctctcttaatactggaccgatgtcaaagattagacacagaaacataggaaaatagggtccaagtTGGAAAATACGGAAGTTACCCTCTAAGCTACTAAAAAAAGCTGATAAATATGATCGTCAAGAGCACATGCAACAGTAAGAAGCGTATGGCCATGTCCTTTCAAGATTCATGGATTAATAACAAATGTTGGAGTGAGTGTTAGCTTACCGTAACTCTTAATGGAATGGCTGATAAATGATGTGAAGAAACAGACATCTTGCATATTTTCACAATGAAGTCGATGTGAGGAATGTGTACAGTGTTAAAAGCTCTTTCTGCCTGCTGTCCAAAAACACTGCAGTAAAACCACAACACAGTACTCCGATTTTGGTAATAACTTATAAATATTTCATATGGTATCACCTTTGCCAATAAATATGTGCGTGTATCTAATGCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312701 lncRNA upstream 113605 26258925 ~ 26259131 (+) True G230563
TU312693 lncRNA upstream 171509 26200247 ~ 26201227 (+) True G230555
TU312661 lncRNA upstream 192720 26179543 ~ 26180016 (+) True G230525
TU312657 lncRNA upstream 197995 26173646 ~ 26174741 (+) True G230521
TU312656 lncRNA upstream 199142 26171388 ~ 26173594 (+) True G230520
TU312737 lncRNA downstream 1582 26382691 ~ 26383656 (+) True G230597
TU312745 lncRNA downstream 1582 26382691 ~ 26383656 (+) False G230597
TU312754 lncRNA downstream 10529 26391638 ~ 26392178 (+) True G230604
TU312750 lncRNA downstream 47325 26428434 ~ 26432122 (+) True G230600
TU312785 lncRNA downstream 232843 26613952 ~ 26614172 (+) True G230635
XM_039791361.1 mRNA upstream 118801 26222789 ~ 26253935 (+) True cnot4b
XM_039791362.1 mRNA upstream 118801 26222789 ~ 26253935 (+) False cnot4b
XM_039791359.1 mRNA upstream 118801 26222790 ~ 26253935 (+) False cnot4b
XM_039791358.1 mRNA upstream 153379 26216141 ~ 26219357 (+) True LOC120553199
XM_039792286.1 mRNA upstream 213823 26145907 ~ 26158913 (+) True il17ra1a
XM_039792278.1 mRNA downstream 5706 26386815 ~ 26427044 (+) True braf
XM_039792277.1 mRNA downstream 5709 26386818 ~ 26427044 (+) False braf
XM_039792455.1 mRNA downstream 312247 26693356 ~ 26968932 (+) True LOC120553759
XM_039792298.1 mRNA downstream 638253 27019362 ~ 27044417 (+) True aebp2
XM_039792299.1 mRNA downstream 638263 27019372 ~ 27044417 (+) False aebp2
TU312620 other upstream 326055 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1594478 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 2059798 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 2485312 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 2524112 23833031 ~ 23848624 (+) False adm2a
XR_005638128.1 other downstream 687968 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1221896 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 1560212 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 1676622 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 2089697 28470806 ~ 28470878 (+) True trnat-ugu_41

Expression Profile