RNA id: TU312737


Basic Information

Item Value
RNA id TU312737
length 731
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G230597
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26382691 ~ 26383656 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAcacaaatgaccacagagaccccaaacaaccccaaaaaaacacaaatgaccacagagacccaaaacaaccccaaagaaaacacaaatgatcacagagacccaaaacaacctcaaagaaaacacaaatgaccacagagacccaaaacaacctcaaagaaaacacaaatgaccacagagacccaaaacaacctcaaagaaaacaaatgaccacagagaccccaaacaaccccaaaaaaacacaaatgaccacagagacccaaaacaaccccaaagaaaacacaaatgaccagagacccaaaacaaccccaaagaaaacacaaatgaccacagagatccaaaacaaccccaaagaaaacacaaatgatcacagagacccaaaacaacctcaaagaaaacacaaatgacaacagagacccaaaacaacctcaaagaaaacacaaatgaccacaaaaacccaaaacaacctcaaagaaaacaaatgaccacagagaccccaaacaaccccaaaaaaacacaaatgaccacagagacccaaaacaaccccaaagaaaacacaaatgaccacagagacccaaaacaaccccaaagaaaacacaaatgaccacaaagagatagaacccgactacaaagagacaaatggcgtttttccattacatggtacctgctctacTCTACTTGGCTCGACTCGACCGCGGTGCCCTGTCCTCcatttccattgcagatttagta

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312701 lncRNA upstream 123560 26258925 ~ 26259131 (+) True G230563
TU312693 lncRNA upstream 181464 26200247 ~ 26201227 (+) True G230555
TU312661 lncRNA upstream 202675 26179543 ~ 26180016 (+) True G230525
TU312657 lncRNA upstream 207950 26173646 ~ 26174741 (+) True G230521
TU312656 lncRNA upstream 209097 26171388 ~ 26173594 (+) True G230520
TU312754 lncRNA downstream 7982 26391638 ~ 26392178 (+) True G230604
TU312750 lncRNA downstream 44778 26428434 ~ 26432122 (+) True G230600
TU312785 lncRNA downstream 230296 26613952 ~ 26614172 (+) True G230635
TU312795 lncRNA downstream 297208 26680864 ~ 26681098 (+) True G230645
TU312811 lncRNA downstream 496851 26880507 ~ 26880987 (+) True G230658
XM_039792387.1 mRNA upstream 2834 26372714 ~ 26379857 (+) False mrps33
XM_039792386.1 mRNA upstream 2834 26372715 ~ 26379857 (+) False mrps33
XM_039792384.1 mRNA upstream 2834 26374205 ~ 26379857 (+) False mrps33
XM_039792385.1 mRNA upstream 2834 26374211 ~ 26379857 (+) False mrps33
XM_039791361.1 mRNA upstream 128756 26222789 ~ 26253935 (+) True cnot4b
XM_039792278.1 mRNA downstream 3159 26386815 ~ 26427044 (+) True braf
XM_039792277.1 mRNA downstream 3162 26386818 ~ 26427044 (+) False braf
XM_039792455.1 mRNA downstream 309700 26693356 ~ 26968932 (+) True LOC120553759
XM_039792298.1 mRNA downstream 635706 27019362 ~ 27044417 (+) True aebp2
XM_039792299.1 mRNA downstream 635716 27019372 ~ 27044417 (+) False aebp2
TU312731 other upstream 1582 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 1582 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 336010 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1604433 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 2069753 24309936 ~ 24312938 (+) False LOC120553083
XR_005638128.1 other downstream 685421 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1219349 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 1557665 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 1674075 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 2087150 28470806 ~ 28470878 (+) True trnat-ugu_41

Expression Profile