RNA id: TU312785


Basic Information

Item Value
RNA id TU312785
length 221
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G230635
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26613952 ~ 26614172 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtactacttgtagacgtttggtatcatttcgggcattattagtggggtaacttacaagatacaaacgtgggtccattagcccctgcgctaagctattcagctgataacgctactctagctaactctctcaatgttcgacccaggtgaaaaaagcttctgggggggtgtttggctcgaggtcatggtgcaaaggaccctagggtgaattattccgaaccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312750 lncRNA upstream 181830 26428434 ~ 26432122 (+) True G230600
TU312754 lncRNA upstream 221774 26391638 ~ 26392178 (+) True G230604
TU312737 lncRNA upstream 230296 26382691 ~ 26383656 (+) True G230597
TU312745 lncRNA upstream 230296 26382691 ~ 26383656 (+) False G230597
TU312701 lncRNA upstream 354821 26258925 ~ 26259131 (+) True G230563
TU312795 lncRNA downstream 66692 26680864 ~ 26681098 (+) True G230645
TU312811 lncRNA downstream 266335 26880507 ~ 26880987 (+) True G230658
TU312799 lncRNA downstream 348990 26963162 ~ 26971853 (+) False LOC120553759
TU312841 lncRNA downstream 501754 27115926 ~ 27116894 (+) True G230685
TU312905 lncRNA downstream 618222 27232394 ~ 27233038 (+) True G230746
XM_039792278.1 mRNA upstream 186908 26386815 ~ 26427044 (+) True braf
XM_039792277.1 mRNA upstream 186908 26386818 ~ 26427044 (+) False braf
XM_039792386.1 mRNA upstream 234095 26372715 ~ 26379857 (+) False mrps33
XM_039792455.1 mRNA downstream 79184 26693356 ~ 26968932 (+) True LOC120553759
XM_039792298.1 mRNA downstream 405190 27019362 ~ 27044417 (+) True aebp2
XM_039792299.1 mRNA downstream 405200 27019372 ~ 27044417 (+) False aebp2
XM_039791355.1 mRNA downstream 431894 27046066 ~ 27051282 (+) True ndufa5
XM_039791354.1 mRNA downstream 454905 27069077 ~ 27071984 (+) False LOC120553194
TU312731 other upstream 232843 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 232843 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 567271 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1835694 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 2301014 24309936 ~ 24312938 (+) False LOC120553083
XR_005638128.1 other downstream 454905 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 988833 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 1327149 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 1443559 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 1856634 28470806 ~ 28470878 (+) True trnat-ugu_41

Expression Profile