RNA id: XM_039792455.1


Basic Information

Item Value
RNA id XM_039792455.1
length 5617
RNA type mRNA
GC content 0.54
exon number 31
gene id LOC120553759
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26693356 ~ 26971853 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCGCCGCGCACTCCAGCCCCTGTGTGTAGGAACCAGAGCAGTGGAGCTCTGAGCTAGACATGGCGGCCGATCCTAAGCCGGACTGGCTCTCCTGCCTTCCCTCTGCCTGGAGTTACGGGGTGACTCGGGATGGACGCATATTCTTTATCAACGAAGAAGCGAAGAGCACAACCTGGCTGCATCCCGTTACCGGAGAAGCCGTAATCACGGGGCACAGAAAAACTCCAGATTTACCAACAGGATGGGAGGAAGGATACACATTCGAGGGAGCTCGCTGCTTCATCAATCACAATGAGCGAAAGGTGACCTGTAAGCACCCGGTGTCAGGCGTCCCCTCCCAAGACAACTGCATCTTTGTCGTGAACGAACACATGAATTGTGGAATGCTTGTCCACCCTGACAAGCCAGTAGAGGCTCTGAGCAGGCCGGCTCCCAAGGCTTCGTCAGAGCAAGGCAGCACCAGTGACAAGAAGGAGCGTCCCATGAGCACCATGAGCGAAGCGTCAAACTACACGGGCGGCTCCGACTACAGCACCTTCCCCGGCAGCCCGGCCACCACcgccaacaccaccaccaccacctccactTCATCCACACGGCCCTCTAGGTCTTCCAAAAAAGTTCACAACTTCGGGAAGAGGTCAAACTCCATCAAGAGGAACCCCAATGCCCCGGTTGTCAAGAGCAACTGGCTTTACAAACAGGACAGCACAGGCATGAAGCTGTGGAAGAAGAGGTGGTTTGTTCTGTGCGACCTGTGCCTCTTCTACTACCGTgACGATAAAGAGGATAGCATCCTGGGAAGTATCCTGCTGCCAAGCTTTCACATCTCCATGTTGTCTGTGGATGACCACATCAGCAGGAAATATGCCTTCAAGGCCACTCACCCCAACATGCGGACGTATTATTTCTGCACTGACACATCCAAAGAGATGGAGTCCTGGATGAAAGTCATGACGGATGCTGCCCTCGTCCACTCTGAACCAGTGAGAAGACTGGACAAGTTGAAAGTGGATCAGCGGACCCCTCAGGAGTTGAACAACTTCCTGAACCACAGAGTCCTAACCCGGCCCGAGATCCAGAACAACGAACGCAACCGCGAGCCCGTGCGACAACACTCCCTGTCTCGAGTCGACGACAAACGGCAGAAAGACCTGGAGAAACACAACTGCCAGCGGGAGTACTACACCTTACAGAGAGACGGGGAGAAGTACTCGCTGAAGAAAGACGGCGTGAGCTACATGCTTCAGAAGGACGGAGAGAGGTACATGCTGCGAAAAGACGGGGACAAGTCTTCGCTGCAGAAAGACGGAGAGGTGTGCGCACTCCACAGGGATCTGGAGAAGCATGCTGTCCAGAACAAGGACGAAACGTGCATTGTGACGCCGACGGAGGAGAAATACGCTCCGTCTAAAGATGGAGAGAAGTACCTGCTCGCgagggatggagagaaataCGCACTGCAAAAAATAGGAGACAGGCACACACTCCAGAAAGATGGACCGAAATACGTTCCCCAGAAGCAGGTGAAGAGACAGCTGTCATTAAAGGAGACGGAGAGGTACGGTGTCATGAGGGAGATGGAGAATAAATATGGTACCATACAGGTTGTGGACAAATACGGCACTCTGAAGGAAGTGAGGAAATACAGCACGCTCCGGGAAGGGGAGAAATACGCTACTCTCAGAGACGCAGGGAAGTATGCTACGATCCGTGGCGGGGATAGATATGGCTTCCAGAGAGACCCGAGTGCAGAGAGGTCTCTGACTAAAATCAGCAGCATCAAGCTGCAGCCGGCTCAGGCCGCCGCTATCGCAGCCGCGGTGTCTGCATCTCGCCAGGGCCAGGCCAATCTCAATGTCCAGCATCCTGCGCAGGTCAACGGCTCGGGGTCCGCTGCGGCGCCCGCGGAGCAGACTGGGGACTGCAGCCCGGCAGAGGTGGACAGCAGCCTGGCCATGGGTCCAGGAAAGTCCCCTGCTCCGGTCCAGGAGCCGGAGAAGGGCCTGTCCCGGACCAATTCCATGCAGCAGCTGGAACACTGGGTCCGCACACACAGGACAAGAGGACTGGACGATGACACCAGGAGTGTTACGTCCTACCAGACCCTACCCAGGAACATGCCCAGCCACCGTGCTCAGATTGTGCCCCGCTACCCAGAGGGCTACCGCACGCTGCCCCGCAACAGCATGATGAGGCCCGACAGCATCTGCAGCGTGGCGGGCTCTGTGTATGACCGGGCCCTCCGTCCCGCCTCCACCAGCACCATCACCACAGCGGAGAAGAGGCGGTCGATGAGGGACGACACCATGTGGCAGCTGTATGAGTGGCAGCAGAGACAGGCCTTCTCCAGGCACAGTCTGGCTCAGCCAACAGCTGTGGGTCATTATGGCACCCTGCCCAGCACAAAGACCATGGGTAACATCTGTGAACACTCTGTGGCGCACTCCATCCCCACCTCACCGTCTCATGGCTCCCTGGCCCTCTACAGCACCTTCTCCCCCCCACGCCAGCAGGTCCCTCCAACAACAGCACCCCCCGCCTCTCTACCTTACGGCTACCCGCCTGACCGACGATCCATCGCAGCCGGCGTCCCTCCTCAGTCCATCACCCCACAGTCCCTGCAAGGCAAGACGCCCGAGGAGCTGACCCTGCTCCTGATCAAGCTCCGCCGGCAGCAGGCGGAGCTCAACAGCCTGCGGGAACACACAGTAGCTCAGCTAATGGCCCTGGGTTTGGAGGGGCCCAACGCCAAGACTGACGTTCTTTCTCATCACCTCCAAAGGAACCTTATTTACCTGGACAGCCAGATCAGTCCAGACGACTTCAAAGACGGCTCGTTCATCCCGCGCACAGAGGAGGCTGACATAGACaccaAGCTGAGCAGACTGTGTGAGCAGGACAAGGCGGTGAGGATGCAGGAGGAGAAACTGCAGCAGCTCCACAGAGAGAAGcacactctTGAGACAGCCCTGCTGTCTGCCAGTCAGGAGCTGAGTGAGCAGAGCGGCTCCAGCGCTGGCGCCCAGAGCCTGGTCCAGCAGAGGGACGTGCTGCAGAACGGCCTGCTCAGCACCTGCAGAGAGCTGTCCAGAGTCAGCACTGAGTTGGAGCGTTCCTGGAGGGAGTACGACAGGTTGGGGGCAGATGTTACTCTGGCCAAGTCCAACCTGCTGGAGCAGCTGGAGGCCCTGGGCAGTCCGCAgacAGAGCCTCCAAGCCAGCGGCACATCCAGATCCAGAAGGAGCTGTGGAGGATCCAGGACGTGATGGAGGCTCTGGCCAAAAACAAACCACAGCGGAGCACAGACAGCACAGGCTTACCCGGTTCCAAACCGCTCTCTAGTCTCCAGAAGAACGAGCAAGCTCCAGACTACCGGCTGTATAAGAGCGAGCCTGAGCTGACCACGGTGAAGGAGGAAGTAGACGAGGCCAACGGTGAGGACAAGGACAAGACCGACTCCTCTGCTGAGAGCAGGGACACTGCAGCTTCAAAAGTGCCCCCCTACCCGGTGGGCATCATTCCTCCCAGGACCAAATCCCCCATAAGTCCTTGCAGGAGTCCTCCCGAGTCCTCCACTATTGCCTCCTATGTCACCCTGAGGAAGACCAAGAAGCCTGAATCCAGATCAGACCGTCCCAGGAGTGCCGTGGATCAGACAGGGTTTGGGGAGCGGGAGGTGGGGAGAACCAGGATGAGTGTGGAGGAGCAGCtggagaggatgaggaggaacCAGCAGGCCTCGTCGCTtcgagagaagaagagagaaacgCCATCCCGCTCGCCCTCCTTCAGCAAAGACAGCCCTTCCTTTATCCAGCAGagtcgGCTCCAGGCGGAGGGGGCGTGTGCAGACCCTGTGGAGCTGGAAGCGGCTCTGCAGCAGCTGAAGGCGGCTCACATGGAGCGGAGCAGGACGGCTGCTGAGGCTCAGCCTGCCCCACAGGAGGTGTACAGGGTGGAGGAGGTGAAAGATGAGGTGCAGCGTGACGGGGACGGTCACGGGACCCTGCAGAGCGTGAAGGACAACAGCACAGACAGTGAGggaaaCACCACCACTGACAACAGCTTCCAGACTCCTGAGCCCGAGACGCCGAGCCCGGAGCCGAGGGAGGACGAACCAGACGCGACGCAACAGAGCGCCAGAGAGGAGAAGCTGGAGCTAACAGCAGATgacaagaaacacaacaacaacaacatgttgGCTTCGCAGACGTTCACCTTGGTGAGCAGAGACACGTGAGCACTGGCGGCCACGACATCCACACTGGCGGCCCATAAAGCCCAAATGTAGCCTGCCTGCACAGAGCATGCTCCACGGCTTCCTGCGTTTACAACAGGACTATTTTGATACTACTGTTACATGCCCACAAGGAGACTGAGAGGATGACAGCCCTGACAACACACAGACGGGCCGCCATCACTTCCCGACAGTGAGAGAGGCAGATGTACTGTATCTTAACACCTGTTAAATCTGTCCAGACTGATATGTCCCTGGGCAAAACACCAACATATGGAGTCAGATTTGTCTCAAAACATTTCTGCATAAAAATAAGATTGTGAAATGGTcataaaaaaagttacaaatgaTGTTTGAGCTGAAATATACTTGCGCAATCCCCAGAAGGACTTTTGAGAGTTTTTTCTGGTTTCCATAGGAGTCTCCAGCTCAGTCGCGGCCAGGGGAAAGTAACTGGCCAGGCATTTGGTTTTTATAGGCGGGCCCTGACAatctaattcttttttttcagactATTCAATTCAACAACGGATTCATATCGAATAGTTCAATATTATGTAGGTTTATATGTTAActgatatgtactgtatattttaatgaTACTTCAAATTCGGTTCAGTCGATATAAATGAATTGTGAGCCGATAGTGCAGCCTATTATTTATCTGAATGGCAAAGTTGTGTAGTCTCCCACTATTAGACCTTACAATTCAGACACAAGCAGTCCAAGGCCTAGTCAGTTATTAGTGCAAAACAAAGTCACGAAAAACAGCGACATCGTGACAGCTGCATGATCAACGCCATGGACAGCAAGACTTTGACTATAGGGGGCATGTTATTCTACTCTCTCATATCTATTACTTCACattgacaaacacacactgaaaaaaGCCCAACATTTGTAACCACCTAAAAGCTGTAAGACAATTCAGGACAAAGAACTTAGACAAAAAGGATAGGAATAATAAGATGACTAACTTACTACACTTTGGTGGCTCAGGCTGGGCCTTATATAGCTGCAGCCACCATTTTCCCGATAAATCGAATCTCCGCAGTGAAGTGTCTTTCCACTCTGTGTTGCATTTCTTGGTCAGATCGTGGAAGCACTCAAGAGCCATAATGTGGACATTACTGAGCAGTGTTTTCAGTGTCCATCATCTGGAGGTGTGGAGCTGTGTGTCGGGTGCGTGGGTCCAGTCAGTGTATGCAGGGGGTTCTACTTTTACTGAGTCCAGGAAGGAGCTGCTCTCCGGGTCGAGTGAAGCAATGGATTCTATGAATGCACCGTTTCGGTCCGTGTACTTTGGCAGCCAACaggtttttgttttgaaattaaaaaacaaaatcggGAACAAAATGTAGGAGAACAAAAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312795 lncRNA upstream 12258 26680864 ~ 26681098 (+) True G230645
TU312785 lncRNA upstream 79184 26613952 ~ 26614172 (+) True G230635
TU312750 lncRNA upstream 261234 26428434 ~ 26432122 (+) True G230600
TU312754 lncRNA upstream 301178 26391638 ~ 26392178 (+) True G230604
TU312737 lncRNA upstream 309700 26382691 ~ 26383656 (+) True G230597
TU312841 lncRNA downstream 146994 27115926 ~ 27116894 (+) True G230685
TU312905 lncRNA downstream 263462 27232394 ~ 27233038 (+) True G230746
TU312936 lncRNA downstream 313567 27282499 ~ 27282919 (+) True G230773
TU312937 lncRNA downstream 314021 27282953 ~ 27283275 (+) True G230774
TU312947 lncRNA downstream 502156 27471088 ~ 27472678 (+) True G230783
XM_039792278.1 mRNA upstream 266312 26386815 ~ 26427044 (+) True braf
XM_039792277.1 mRNA upstream 266312 26386818 ~ 26427044 (+) False braf
XM_039792387.1 mRNA upstream 313499 26372714 ~ 26379857 (+) False mrps33
XM_039792386.1 mRNA upstream 313499 26372715 ~ 26379857 (+) False mrps33
XM_039792384.1 mRNA upstream 313499 26374205 ~ 26379857 (+) False mrps33
XM_039792298.1 mRNA downstream 50430 27019362 ~ 27044417 (+) True aebp2
XM_039792299.1 mRNA downstream 50440 27019372 ~ 27044417 (+) False aebp2
XM_039791355.1 mRNA downstream 77134 27046066 ~ 27051282 (+) True ndufa5
XM_039791354.1 mRNA downstream 100145 27069077 ~ 27071984 (+) False LOC120553194
XM_039791352.1 mRNA downstream 100145 27069077 ~ 27071984 (+) True LOC120553194
TU312731 other upstream 312247 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 312247 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 646675 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1915098 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 2380418 24309936 ~ 24312938 (+) False LOC120553083
XR_005638128.1 other downstream 100145 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 634073 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 972389 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 1088799 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 1501874 28470806 ~ 28470878 (+) True trnat-ugu_41

Expression Profile