RNA id: TCONS_00072907


Basic Information

Item Value
RNA id TCONS_00072907
length 905
lncRNA type retained_intron
GC content 0.39
exon number 5
gene id XLOC_037043
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 18215940 ~ 18278580 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCATGGCGAGCTCCAGTGGCGTTACGTTGGACGGAGACTTGATGAGATATGCTGAATATACACCAAAATCTAACATGAAGAGTGAGACAGATATTGACAGACGCCTTGGTGGCGCTCTGATGGCAGTGGGGTTAGGGGTTGCTGCAGCAGGTTTTGCAGGTCGATATGCTTTCCATTTATGGAGGCCTCTTGGTCAAGTTATTACCGAAACTGCAAAGAAGTTCCCCTCTTCGTCATTTTCCGCATATTACAAAGGTGGATTTGAGCAGAAGATGACCAGACGGGAAGCCAGCCTCATTCTAGGGATCAGTCCGACCAGCACTAAGACAAAGGTACGGGAAGCCCACAGAAGGATCATGGTCCTAAATCATCCAGATAAAGGTCAGTAGTTCAGGTCGTCGTGTCGGGTGGTTGTGTGTTGGTCAATAATTCTGACTCAGCTCTAGCTCAATGTATTGTCTGAGCAGACAGAGGAAGAGATGGGTGTTGATTACATTATTGATTTGAAGAGCATTTGTCATAACACACTCTTTAAAGAGGGGTTACATGCCTGCAGTGCTGACTTGACGTAATATAAGGCATACATAAGAACTGTACACAACAAGATGGAGCAGGTGAATCATCACTTCAAACATTTGCAAGTACTGTAGATCTAAATTATTTTCTAAacaatatacagtaaaaaaacaagcactgagtaatatttaataactaataataactgtACATAGTGATAAACAGCAACTTTTACTTACAATTtcacatatttatatacaaaatGACACTTTAAATGTTTGCGTTTAAATCTATTTTCTAGTCATTTTAATCAGTTCATAGTAATAAGTCAGTTAAATCACTCTAATGTAATTTTAGGACTGAAGTTTAAATCTGAGACACTATTA

Function

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0001405 PAM complex, Tim23 associated import motor cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001671 ATPase activator activity molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040801-216 Predicted to enable ATPase activator activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of PAM complex, Tim23 associated import motor. Orthologous to human DNAJC15 (DnaJ heat shock protein family (Hsp40) member C15).

Ensembl:

ensembl_id ENSDART00000141337

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074890 lncRNA upstream 579291 17636381 ~ 17636674 (+) True XLOC_037037
TCONS_00072895 lncRNA upstream 775805 17438775 ~ 17440160 (+) True XLOC_037036
TCONS_00074889 lncRNA upstream 872421 17337151 ~ 17343544 (+) True XLOC_037032
TCONS_00072890 lncRNA upstream 881442 17331502 ~ 17334523 (+) True XLOC_037031
TCONS_00072887 lncRNA upstream 904284 17309058 ~ 17311681 (+) False XLOC_037031
TCONS_00072918 lncRNA downstream 663155 18911697 ~ 18914987 (+) False XLOC_037050
TCONS_00075080 lncRNA downstream 663184 18911726 ~ 18914987 (+) True XLOC_037050
TCONS_00072922 lncRNA downstream 846551 19095093 ~ 19101825 (+) False XLOC_037052
TCONS_00074891 lncRNA downstream 980277 19228819 ~ 19229066 (+) True XLOC_037053
TCONS_00075081 lncRNA downstream 1000108 19248650 ~ 19249083 (+) False XLOC_037054
TCONS_00072904 mRNA upstream 172667 18023288 ~ 18043298 (+) True XLOC_037041
TCONS_00072899 mRNA upstream 209333 17971935 ~ 18006632 (+) False XLOC_037040
TCONS_00072900 mRNA upstream 214194 17982737 ~ 18001771 (+) False XLOC_037040
TCONS_00072901 mRNA upstream 217491 17983463 ~ 17998474 (+) False XLOC_037040
TCONS_00072902 mRNA upstream 218711 17984358 ~ 17997254 (+) False XLOC_037040
TCONS_00072910 mRNA downstream 324428 18572970 ~ 18587754 (+) False XLOC_037046
TCONS_00072911 mRNA downstream 327505 18576047 ~ 18584555 (+) True XLOC_037046
TCONS_00072916 mRNA downstream 467943 18716485 ~ 18721416 (+) True XLOC_037048
TCONS_00072917 mRNA downstream 580818 18829360 ~ 18905317 (+) True XLOC_037049
TCONS_00072919 mRNA downstream 791066 19039608 ~ 19057957 (+) True XLOC_037051
TCONS_00072905 other upstream 51938 18163629 ~ 18164027 (+) True XLOC_037042
TCONS_00072903 other upstream 217489 17988466 ~ 17998476 (+) True XLOC_037040
TCONS_00072896 other upstream 552900 17662950 ~ 17663065 (+) True XLOC_037038
TCONS_00072889 other upstream 888459 17317167 ~ 17327506 (+) False XLOC_037031
TCONS_00072882 other upstream 2230168 15982344 ~ 15985797 (+) True XLOC_037025
TCONS_00072908 other downstream 67861 18316403 ~ 18316520 (+) True XLOC_037044
TCONS_00072909 other downstream 101825 18350367 ~ 18350483 (+) True XLOC_037045
TCONS_00072912 other downstream 356918 18605460 ~ 18607993 (+) False XLOC_037047
TCONS_00072913 other downstream 357022 18605564 ~ 18608269 (+) False XLOC_037047
TCONS_00072914 other downstream 357029 18605571 ~ 18607805 (+) False XLOC_037047

Expression Profile

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