RNA id: TU313217



Basic Information


Item Value
RNA id TU313217
length 213
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G231022
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28354093 ~ 28354305 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CtgtatgtttcctgttttgtataTTGAGTCTGTGCattgtgtatatttctgtttcctgttttattttgatagtctgttttctgtcttgtctagttttgcttcctgtgttttcccgccttgtcggattgtcctgccccgccctgatgtgtttcacctgctgtatcacctgtccctcaTTTGCTCGTTACCTCATGTCTTTAGcgtctgtgttcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313216 lncRNA upstream 2650 28351029 ~ 28351443 (+) True G231021
TU313215 lncRNA upstream 10122 28343768 ~ 28343971 (+) True G231020
TU313214 lncRNA upstream 16095 28336981 ~ 28337998 (+) True G231019
TU313212 lncRNA upstream 50253 28303467 ~ 28303840 (+) True G231017
TU313185 lncRNA upstream 238657 28115187 ~ 28115436 (+) True G230991
TU313218 lncRNA downstream 709 28355014 ~ 28355368 (+) True G231023
TU313224 lncRNA downstream 27016 28381321 ~ 28381567 (+) True G231029
TU313226 lncRNA downstream 42607 28396912 ~ 28397114 (+) True G231031
TU313228 lncRNA downstream 61586 28415891 ~ 28452795 (+) True G231033
TU313267 lncRNA downstream 124230 28478535 ~ 28543954 (+) True G231067
XM_039792180.1 mRNA upstream 60547 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 60547 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 60547 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 330475 28016843 ~ 28023618 (+) True LOC120552999
XM_039791440.1 mRNA upstream 394695 27913712 ~ 27959398 (+) False LOC120553234
XM_039792477.1 mRNA downstream 262950 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 736652 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 736677 29090982 ~ 29099400 (+) False LOC120553059
TU313169 other upstream 295875 28057731 ~ 28058218 (+) True G230975
TU313087 other upstream 406620 27941321 ~ 27947473 (+) True G230904
TU313012 other upstream 750391 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 1281541 27069077 ~ 27072552 (+) False LOC120553194
TU312732 other upstream 1972984 26372736 ~ 26381109 (+) False mrps33
unassigned_transcript_1530 other downstream 116501 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 116801 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 146929 28501234 ~ 28501419 (+) True LOC120553833
XR_005638238.1 other downstream 226182 28580487 ~ 28580602 (+) True LOC120553840
TU313309 other downstream 258250 28612555 ~ 28620865 (+) False LOC120553776

Expression Profile