RNA id: TU313224



Basic Information


Item Value
RNA id TU313224
length 247
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G231029
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28381321 ~ 28381567 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gttttattaagctaacaacggtgtccgatttcaagttaatgaatttttgtgaattccagaggaattctaagaggaggctagctagctctcattgatagagctccatccagccgcaggctctatcaatgagactcacggacaagcggcgtttatttccccaatcgtttgtttaaataactcaacacattataattacacacattaaaagagtaactggaacctgtggtaagagaatgctggcgtaaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313218 lncRNA upstream 25953 28355014 ~ 28355368 (+) True G231023
TU313217 lncRNA upstream 27016 28354093 ~ 28354305 (+) True G231022
TU313216 lncRNA upstream 29878 28351029 ~ 28351443 (+) True G231021
TU313215 lncRNA upstream 37350 28343768 ~ 28343971 (+) True G231020
TU313214 lncRNA upstream 43323 28336981 ~ 28337998 (+) True G231019
TU313226 lncRNA downstream 15345 28396912 ~ 28397114 (+) True G231031
TU313228 lncRNA downstream 34324 28415891 ~ 28452795 (+) True G231033
TU313267 lncRNA downstream 96968 28478535 ~ 28543954 (+) True G231067
TU313300 lncRNA downstream 204175 28585742 ~ 28585943 (+) True G231094
XR_005638181.1 lncRNA downstream 226316 28607883 ~ 28616127 (+) True LOC120553529
XM_039792180.1 mRNA upstream 87775 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 87775 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 87775 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 357703 28016843 ~ 28023618 (+) True LOC120552999
XM_039791440.1 mRNA upstream 421923 27913712 ~ 27959398 (+) False LOC120553234
XM_039792477.1 mRNA downstream 235688 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 709390 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 709415 29090982 ~ 29099400 (+) False LOC120553059
TU313169 other upstream 323103 28057731 ~ 28058218 (+) True G230975
TU313087 other upstream 433848 27941321 ~ 27947473 (+) True G230904
TU313012 other upstream 777619 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 1308769 27069077 ~ 27072552 (+) False LOC120553194
TU312732 other upstream 2000212 26372736 ~ 26381109 (+) False mrps33
unassigned_transcript_1530 other downstream 89239 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 89539 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 119667 28501234 ~ 28501419 (+) True LOC120553833
XR_005638238.1 other downstream 198920 28580487 ~ 28580602 (+) True LOC120553840
TU313309 other downstream 230988 28612555 ~ 28620865 (+) False LOC120553776

Expression Profile