RNA id: TU313228


Basic Information

Item Value
RNA id TU313228
length 261
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G231033
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28415891 ~ 28452795 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTCAGCAGgtgacaggctcgttagcttgattacagacatcaaagcaagtttataaacattcccaggccatggttaccatgacaacactttcacagacacacacccagatactacaggcagtaatatgaacagtagtctatacagatactacaggcagtaatatgaacagtagtctatacagatactacaggcagtaatatgaacagtagtctagatctgttgccttccacttctgtctgtctgtcttctctctccccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313226 lncRNA upstream 18777 28396912 ~ 28397114 (+) True G231031
TU313224 lncRNA upstream 34324 28381321 ~ 28381567 (+) True G231029
TU313218 lncRNA upstream 60523 28355014 ~ 28355368 (+) True G231023
TU313217 lncRNA upstream 61586 28354093 ~ 28354305 (+) True G231022
TU313216 lncRNA upstream 64448 28351029 ~ 28351443 (+) True G231021
TU313267 lncRNA downstream 25740 28478535 ~ 28543954 (+) True G231067
TU313300 lncRNA downstream 132947 28585742 ~ 28585943 (+) True G231094
XR_005638181.1 lncRNA downstream 155088 28607883 ~ 28616127 (+) True LOC120553529
TU313307 lncRNA downstream 155091 28607886 ~ 28616103 (+) False LOC120553529
TU313341 lncRNA downstream 291276 28744071 ~ 28744338 (+) True G231122
XM_039792180.1 mRNA upstream 122345 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 122345 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 122345 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 392273 28016843 ~ 28023618 (+) True LOC120552999
XM_039791440.1 mRNA upstream 456493 27913712 ~ 27959398 (+) False LOC120553234
XM_039792477.1 mRNA downstream 164460 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 638162 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 638187 29090982 ~ 29099400 (+) False LOC120553059
TU313169 other upstream 357673 28057731 ~ 28058218 (+) True G230975
TU313087 other upstream 468418 27941321 ~ 27947473 (+) True G230904
TU313012 other upstream 812189 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 1343339 27069077 ~ 27072552 (+) False LOC120553194
TU312732 other upstream 2034782 26372736 ~ 26381109 (+) False mrps33
unassigned_transcript_1530 other downstream 18011 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 18311 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 48439 28501234 ~ 28501419 (+) True LOC120553833
XR_005638238.1 other downstream 127692 28580487 ~ 28580602 (+) True LOC120553840
TU313309 other downstream 159760 28612555 ~ 28620865 (+) False LOC120553776

Expression Profile