RNA id: TU313300



Basic Information


Item Value
RNA id TU313300
length 202
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G231094
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28585742 ~ 28585943 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTCAGGACCTTCGAGCAGTAAATGCAGTGGGTCTATGCTCGAGCACCTAATGTCTCCCACAGCTAAACATAACATTCTGCAGggaatgttaaatgttttgattCTCTGTTGTTTCGTCTAACGTTTTTCTTTCCTCAGTGTTCCAGTAGAAAAGACAGTCAATATTGTTTTATAGTTCTGGGTGATGGTAAGCTGTACACCT

Function


GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313267 lncRNA upstream 41788 28478535 ~ 28543954 (+) True G231067
TU313228 lncRNA upstream 132947 28415891 ~ 28452795 (+) True G231033
TU313226 lncRNA upstream 188628 28396912 ~ 28397114 (+) True G231031
TU313224 lncRNA upstream 204175 28381321 ~ 28381567 (+) True G231029
TU313218 lncRNA upstream 230374 28355014 ~ 28355368 (+) True G231023
XR_005638181.1 lncRNA downstream 21940 28607883 ~ 28616127 (+) True LOC120553529
TU313307 lncRNA downstream 21943 28607886 ~ 28616103 (+) False LOC120553529
TU313341 lncRNA downstream 158128 28744071 ~ 28744338 (+) True G231122
TU313344 lncRNA downstream 159959 28745902 ~ 28746127 (+) True G231125
TU313348 lncRNA downstream 181378 28767321 ~ 28767630 (+) True G231129
XM_039792180.1 mRNA upstream 292196 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 292196 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 292196 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 562124 28016843 ~ 28023618 (+) True LOC120552999
XM_039791440.1 mRNA upstream 626344 27913712 ~ 27959398 (+) False LOC120553234
XM_039792477.1 mRNA downstream 31312 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 505014 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 505039 29090982 ~ 29099400 (+) False LOC120553059
XR_005638238.1 other upstream 5140 28580487 ~ 28580602 (+) True LOC120553840
XR_005638234.1 other upstream 84323 28501234 ~ 28501419 (+) True LOC120553833
unassigned_transcript_1531 other upstream 114564 28471106 ~ 28471178 (+) True trnak-uuu_24
unassigned_transcript_1530 other upstream 114864 28470806 ~ 28470878 (+) True trnat-ugu_41
TU313169 other upstream 527524 28057731 ~ 28058218 (+) True G230975
TU313309 other downstream 26612 28612555 ~ 28620865 (+) False LOC120553776
TU313332 other downstream 59093 28645036 ~ 28645537 (+) True G231113
XR_005638249.1 other downstream 225909 28811852 ~ 28811952 (+) True LOC120553854
XR_005638247.1 other downstream 227382 28813325 ~ 28813435 (+) True LOC120553851
XR_005638248.1 other downstream 234002 28819945 ~ 28820054 (+) True LOC120553852

Expression Profile