RNA id: XR_005638181.1


Basic Information

Item Value
RNA id XR_005638181.1
length 426
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC120553529
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28607883 ~ 28616127 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCTGGGGTAAGTCCTCCACAGTAGAGGTAAGTCCCCTGGGGTAAGTCCTCCACAGTAGAGGTAAGTCCCCAAAGGAGTTGAAGTCTCCTAGGTATGACTGGTGAACGATTGTATTATTGAACCATTTCACACTATTTAGGTGATATGACAAAATAATCCAATGTTCACATGActtgttggttttggtgtcaGACAATTGAGCTAGTTCGATTGTGCAGAGGCTGGGTACCAGGGTATAGCGTGCCATATTTCCCAGCTGGCCAAAACCACGGTATAGGGAAACTTGATTTTGGTGTCAAATAGGAATATTACTTTCCTGTTTAAGGGTTGAGAACCAGGGACATAGTGTGCCATAAATCTCAACTGGCCACAatcaaggtttaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313300 lncRNA upstream 21940 28585742 ~ 28585943 (+) True G231094
TU313267 lncRNA upstream 63929 28478535 ~ 28543954 (+) True G231067
TU313228 lncRNA upstream 155088 28415891 ~ 28452795 (+) True G231033
TU313226 lncRNA upstream 210769 28396912 ~ 28397114 (+) True G231031
TU313224 lncRNA upstream 226316 28381321 ~ 28381567 (+) True G231029
TU313341 lncRNA downstream 127944 28744071 ~ 28744338 (+) True G231122
TU313344 lncRNA downstream 129775 28745902 ~ 28746127 (+) True G231125
TU313348 lncRNA downstream 151194 28767321 ~ 28767630 (+) True G231129
TU313351 lncRNA downstream 154487 28770614 ~ 28771569 (+) True G231132
TU313354 lncRNA downstream 175833 28791960 ~ 28792745 (+) True G231135
XM_039792180.1 mRNA upstream 314337 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 314337 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 314337 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 584265 28016843 ~ 28023618 (+) True LOC120552999
XM_039791440.1 mRNA upstream 648485 27913712 ~ 27959398 (+) False LOC120553234
XM_039792477.1 mRNA downstream 1128 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 474830 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 474855 29090982 ~ 29099400 (+) False LOC120553059
XR_005638238.1 other upstream 27281 28580487 ~ 28580602 (+) True LOC120553840
XR_005638234.1 other upstream 106464 28501234 ~ 28501419 (+) True LOC120553833
unassigned_transcript_1531 other upstream 136705 28471106 ~ 28471178 (+) True trnak-uuu_24
unassigned_transcript_1530 other upstream 137005 28470806 ~ 28470878 (+) True trnat-ugu_41
TU313169 other upstream 549665 28057731 ~ 28058218 (+) True G230975
TU313332 other downstream 28909 28645036 ~ 28645537 (+) True G231113
XR_005638249.1 other downstream 195725 28811852 ~ 28811952 (+) True LOC120553854
XR_005638247.1 other downstream 197198 28813325 ~ 28813435 (+) True LOC120553851
XR_005638248.1 other downstream 203818 28819945 ~ 28820054 (+) True LOC120553852
XR_005638246.1 other downstream 205248 28821375 ~ 28821482 (+) True LOC120553849

Expression Profile