RNA id: XM_039792477.1


Basic Information

Item Value
RNA id XM_039792477.1
length 4727
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC120553776
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28612555 ~ 28630012 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGACACGCGCTCAAGACAACCAAGACACAGAGGAATCTGGCCTTAAAGAGCTTCAGGCTCAACTGCTCAAAATGCAATTAGCTGAGGCTAGGCAAAAGATTAATGAGGGAAAGAAAGACAAGGACAAAAAAGGCAGACATGTCATGGCTTTAACTGCAGGGCCCCCCACTCCTGACCTTTTCCCCATTCCTGACTGGATCccagcccctccacacacacaaccacaatccTATGCCCAACCCCCACCCTATAGGCGGGGTCCTCCCCAATGGCAACAAAATAGTGGGAGGGGAtatgggagaggaggagggagaccaGGGAGGGGGCGGGGCGGCCCGCCCCGAGGGGGAACTCCAGGGGCCTGCTTTGCCTGTGGTCAGATGGGACACTGGTCTAGGGAGTGTCCGCTAAATGGGGGTCAGTCACCAAGGGGGAAGGGGTTACCAGCAAAGGGGTCCATACCAGCCACCGCAGGGACCACCGACAGGTCCACCCCAAGCGCAACTGCAGATGGCTGAATGGAACTGGACTGGCTGGGAACCAGGCCAGCAGTTGCCACAATGACACTCCCCAGCAGAGCAACAGGACCCAGGGACCACGGCAGATCCCATGGTGTCCATGAGAGTAGAAGGAACTGTTCAGCCCTTCTTAGTTGACACAGGAGCTACTTGCTCAACAATCAGACATTGTCCATCACAACACATTTCACCAAGTCACATTACGGTGATGGGTTTCTCTGGGGAAAAGCAAAAACTGCCAATAACAAAACCACTGCATACAGCTATAGGGAACCAATGCGTCCTCCATCCATATGTTGTTTCTCCCACGGTTCCTATGAACCTCCTTGGCAGAGATCTCCTCATAAAACTGGGCGTGTCTATCCTGTGTTGTGCTGATGGAATATTACTGACTTTCCCTGACGGCCGTCAAATGACCTGTTCTGAAGGAAACCAGGGCCACGGACAATACATCCTTTCCCCCACCTCTGACTCCTACGCTGACATTTACTGGGCTATGTTGTCTCCAGAAGGCCCGGGCTCCGGGGGTATCCTGAAACAGTTCTTCCTCTGGAAGCCCTGGATCTCGCAAGTTGCACCCTTTGTCCCTCCCCCAGATCCCCCACATGTCACCCTAAATTATGATGTCCACTCTGATCTCTGTTATCAAGACGCTTTTGACACGATAGCGGACACCAGATGGGACATCCACTCTCAAAACATCTTTGTGGGACCTGAAGGCGTAGCCGCCGCGGTCCAGCTAACCCCTGATCAGTTGCCATGGTTTGTTATGACTGAGGAATCTGCCCCACATGTTTCACTCGCCCTGCACCCAGGGTATGAGGCTAAATCCCTAGGCCCGATGGTCAAGACAGCCCTGACTGCCACCGACTGGACACTCACTCCTCTCCCCAAGGTTCAATACTCTCCCTCCACCAAAACCTTCCGCATTCTCTGTGAGGGTCGAGACACAGCTTTTCTCCAACATGACTTAATTGCTAGGCACCATGGTAGGGAAAGGACTGACCATCAAGATGCTAAAGCCATGTTAGATGGTCTTCCCACCACTCTCTGGTCACAAACACCGACTGATGTAGGTTTAGTGCATTGTGCCCCGCTGACCTTTCACCTTAGGCCATCTCCGCCTGTATGGATACCACAATACTCATGCTCTAGGGAAAAGCAGCTAGGCATTTCAGATACAGTCACAGGATTGATTGAGGCAGGGGTGTTAGAACCCTCTCGTTCCCAGTGGAACACACCTATCCTcccagttttgaaagcagaaacAGGTAAATATAGGATGGTTCATGACCTGCGCGCCATAAATTATCTCATTGTAGACACCACTCTCACTGTACCTAACCCACATGTTGCTCTCGCTGACATAGGACCACAACACCACTGGTACACAGTTTTAGACCTctcaaatgcatttttctgcCTCCCTCTGGCCGAACATCTGCGAGATATTTTCTCATTCACATACATGGGTCGCCCCATGCGATACACACGCCTACCACAAGGGTTTAACCTCTCCCCAGGCCTGTTTAACAAAGTTCTGAAAAACTCACTGACAGATTGTACCCTACCACCTGACACCGTTCTGGTACAATATGTAGATGATCTTCTGATAGCTGCACCCACCGCAATTGCCTGTCTGCAGGCTACCAAAGATGTTTTGACCACCCTGGCTAGGGAGGGTTATAAAGTAAGCAGGAAGAAAATACAAGTCTGTAGAAGAGAAGTTACCTTTCTGGGCAGAATCCTTTCAGGCAGTGGTGTAGGTGTTTCCCCTGCACACAGATCAGTTATTTTGGCCCACCCGAAACCATGTACTGTGaaagacatgttgtcatttttGGGCTTGACAGGCTACAGCAAATCCTATGTTCCAGGCTATGTCGACCTTACAGATCCCCTCCGGGCTATGGTACGCCAACAGGGCATGCGCAATTTGTCCTCAGCCTTAGACTGGACATTTGAAGGCAATGAGGCAttcattaaacttaaacaatCCCTTGCTGCAGCAGCAAATCTGGCCTGCCCAAACTCCCTGCCCTTCCACTTGGATGTTtctgaaacaaaacaagcaactaATGGGGTTTTGTTTCAGAAAAAGGGGGTGACAGAGTAGTGTTGAACTACATGAGCATCCCAtttgaacaaattgaaaaagCCCGCCTGCACACAACATGCTGCAGGGGTGGCAAAATGCATTCAGAAATCATCACACATAGTTATGGGACACCCCCTGATAGTGTTGACCTCCCACAGCATAGTGTCCTTTGTTAACTCAGCCATGTTTTCACTCACACCAACCAGACAAAGGCAAATCAGCAAAGTTTTGCAGGCCCCAAACCTGACCTTTACACATGAAGGCATTAACATGGCAGACCAGATGGGGGAGGGGGAACCACATGAGTGTGAGGACAGGACAAGAAAAGTGGAAAACGTCAGACCACTAGGGGAAGGAAGAGTGCTATTCACAGATGGGTGTTGTTTTAGACATGAGACTGAGGGACTGAAAGCAGCATATGCAGTGGTTGAAGACACAGGAGGGGAAGTGGTAACATTAGAAGCAGAAAAGATGCAAGGTGCGCAGTCAGCACAGAAAGCAGAAGTGGAAGCACTCATCAGAGCCTTAGAGCTAGGAAAAAATCAAGCTGTAACTGTATACTCTGACTCAGCCTATGCAACAGGAGCAGCTCACCTCGAATTACCACAGTGGCAGAGAGCAGGGTTTTTGACAGCAGGAGGAAAACCTATTAAACATGAGGAAGAAATGAAAAGATTAGCAAAAGCTATTCTCCTACCAGCCAAGGTAGCTATAGTCAAATGTAAGGGCCACAGCAATACTCAAGATAGAGTGAGTAAGGGAAATGAAGCAGCAGACAGCGCCGCAAAAACCGCAGCAGGATATTTGGCACACCATCTAATGATGACTGCAGACCTAGAAACCAGGGCCGAGCTTAGCAAAGAAACAATCATTGAGTTACAAGCACGAGCTTCCCCCCAAGAAAAAACAGTTTGGAAAAGCAGGGGAGCTATACAAAGTGAGGGGTTGTGGCGGGGCCCGGATGGTAGACCTATTCTGCCACCAGGGGTACGGAGACGTGAAACCCAGACGGGGGACAGTACCCCCCTTGAGACAGTGGCAGGGAAAGAGATTGTGATTGACTACACTGACATGACGAACAGGGTGACCGCAGCACACCCAAACGCAGAAACCAAAACTCCTCCAGACGCTGAGTGGGTGCTCCTGAAAGCAATTAAGAGGAAGTGGTCTGAACCTCGCTGGCAGGGGCCCTTCAGAGTGACGGCGAGAACATCCCACGCAGTACAGCTCGAGGcgaaaaaggtaaacagtgTTCCAGATGCCCCATTCAAAGATATTTGTATAGACTATACAGACATGGGGGCAGATAACATGGTAAGGGGATACAGATACATTTTGGTTATGGTAGACCGTTACACCAAATGGATTAAAGCTATCCCATGTAAGAAAGAGGATGCAAACTCAGTGGTAAAATGGGTAAAAAACGAACTGATACCCAGATATGGGGTCCCCAGATGCATAAGATCAGATAATGGATCCCACTTCACCAGCCAAAAGTTGAGTGAAGTGGAAAAGTATTTTGGCATTGTGCACAAGTTTGGATCAGTGTATCACCCCCCCTCACAAGGTCTGGTGGAGAGGGCTAACCaaactttgaaaagaaaaattgcCAAAGCTTGTCATAACACCAAAATGAATTGGGTAGATGCACTGCCTCTGGCACTGATGTCTATGAGATCTTCACAGAGTAATAAAACTCACCTGTCACCTCACGAGTTACTGACAGGCAGACCAATGCCAGGGCCGCCCAGAGAGGGCGGTATAGGCCCAGTATTGGATCTGTGGCAGATAGAAGCAGACGATTATATGAGGGCTCTCACTAATCTCACTCGAGTATTGTCTTCACAGGTCCAAGCTGCAACGGAAGCACCGCAGAGCGAAACAGAGACTCCTGTAAAGCCTGGCGATTGGGTGAGGTTGAGAGTTCACAAACGGAAGTGGACAGAACCAAGGTGGACAGGACCATGGGAAGTGATTGAAAGCTCAACCCACGCCCTGAAAGTTAGAGGTAAAACAGGAGCTAATTGGCACCACCTAACACACTGTGCACCCGCCCAGGCGCCCTCCCGAACACTAGAGGAGGTTAGGACTGATTTGACCACGCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638181.1 lncRNA upstream 1128 28607883 ~ 28616127 (+) True LOC120553529
TU313307 lncRNA upstream 1152 28607886 ~ 28616103 (+) False LOC120553529
TU313300 lncRNA upstream 31312 28585742 ~ 28585943 (+) True G231094
TU313267 lncRNA upstream 73301 28478535 ~ 28543954 (+) True G231067
TU313228 lncRNA upstream 164460 28415891 ~ 28452795 (+) True G231033
TU313341 lncRNA downstream 114059 28744071 ~ 28744338 (+) True G231122
TU313344 lncRNA downstream 115890 28745902 ~ 28746127 (+) True G231125
TU313348 lncRNA downstream 137309 28767321 ~ 28767630 (+) True G231129
TU313351 lncRNA downstream 140602 28770614 ~ 28771569 (+) True G231132
TU313354 lncRNA downstream 161948 28791960 ~ 28792745 (+) True G231135
XM_039792180.1 mRNA upstream 323709 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 323709 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 323709 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 593637 28016843 ~ 28023618 (+) True LOC120552999
XM_039791439.1 mRNA upstream 657857 27849737 ~ 27959398 (+) True LOC120553234
XM_039791124.1 mRNA downstream 460945 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 460970 29090982 ~ 29099400 (+) False LOC120553059
XR_005638238.1 other upstream 36653 28580487 ~ 28580602 (+) True LOC120553840
XR_005638234.1 other upstream 115836 28501234 ~ 28501419 (+) True LOC120553833
unassigned_transcript_1531 other upstream 146077 28471106 ~ 28471178 (+) True trnak-uuu_24
unassigned_transcript_1530 other upstream 146377 28470806 ~ 28470878 (+) True trnat-ugu_41
TU313169 other upstream 559037 28057731 ~ 28058218 (+) True G230975
TU313332 other downstream 15024 28645036 ~ 28645537 (+) True G231113
XR_005638249.1 other downstream 181840 28811852 ~ 28811952 (+) True LOC120553854
XR_005638247.1 other downstream 183313 28813325 ~ 28813435 (+) True LOC120553851
XR_005638248.1 other downstream 189933 28819945 ~ 28820054 (+) True LOC120553852
XR_005638246.1 other downstream 191363 28821375 ~ 28821482 (+) True LOC120553849

Expression Profile